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CPh
Euk-VirStrawberry_chlorotic_fleck-associated_virus
CPh__YP_762626__Strawberry_chlorotic_fleck-associated_virus__399314
Identity
- Accession:
- YP_762626 ↗
- Protein ID:
- CPh
- Kingdom:
- euk
Quality
75.3
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Closterovirus›
Strawberry_chlorotic_fleck-associated_virus
TaxID: 399314
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 189-312
Domain cluster:
rep: HSP90__YP_009553249__Blackcurrant_leafroll-associated_virus_1__2292426__D184-302
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03225.20 best | Viral_Hsp90 | 55.8 | 4.40e-15 | 100.0% | 23.2% |
D2
high
residues 332-489
Domain cluster:
rep: Hsp90__YP_010086803__Pistachio_ampelovirus_A__2093224__D326-483
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03225.20 best | Viral_Hsp90 | 83.3 | 2.00e-23 | 98.7% | 26.0% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qmgA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 46.0 | 3.71e-01 | 84.2% | 93.5% |
| 2rekA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 42.0 | 4.12e-01 | 90.5% | 87.8% |
D3
medium
residues 17-102
Domain cluster:
rep: p54__YP_003075969__Carrot_yellow_leaf_virus__656190__D13-92
D4
medium
residues 124-168
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bosA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 55.0 | 4.85e-01 | 93.3% | 79.1% |
| 1td2A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.63 | 51.0 | 3.17e-01 | 93.3% | 19.9% |
| 1k87A03 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.63 | 43.0 | 2.58e-01 | 73.3% | 9.4% |
| 2c83A01 | 3.40.50.11120 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sialyltransferase, N-terminal GT-B Rossman nucleotide-binding domain | 0.61 | 47.0 | 3.02e-01 | 84.4% | 32.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3801859 | 109.4.1.1242 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_RRP12_N | 0.66 | 54.0 | 3.38e-01 | 91.1% | 32.2% |
| 5044386 | 2006.1.2.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH | 0.65 | 52.0 | 3.35e-01 | 91.1% | 77.0% |
| 4121495 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 53.0 | 4.54e-01 | 93.3% | 70.7% |
| 3978468 | 148.1.3.55 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Mg_chelatase_C | 0.63 | 52.0 | 4.32e-01 | 93.3% | 73.8% |
| 3584100 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.56 | 44.0 | 3.96e-01 | 100.0% | 98.7% |
| 4916303 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.52 | 40.0 | 3.72e-01 | 93.3% | 84.4% |