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CPm

Euk-Vir

Tobacco_virus_1

CPm__YP_009162626__Tobacco_virus_1__1692045

Identity

Accession:: YP_009162626 ↗
Protein ID:: CPm
Kingdom:: euk

Quality

77.2 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Closterovirus› Tobacco_virus_1

TaxID: 1692045

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 46-152

PDB

Domain cluster: rep: CP__YP_009162627__Tobacco_virus_1__1692045__D32-141

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01785.23 best	Closter_coat	64.5	1.10e-17	100.0%	55.0%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2oq1A02	1.10.930.10	Mainly Alpha › Orthogonal Bundle › Syk Kinase; Chain A, domain 2 › Syk Kinase; Chain A, domain 2	0.74	33.0	4.89e-01	73.8%	100.0%
5adxJ01	3.90.640.10	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4	0.60	43.0	4.57e-01	75.7%	100.0%
2ckwA03	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.54	37.0	3.60e-01	100.0%	64.7%
2rdpA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	43.0	3.99e-01	88.8%	90.0%
2cs7A00	3.10.50.90	Alpha Beta › Roll › Chitinase A; domain 3 ›	0.53	28.0	3.69e-01	90.7%	100.0%
7jgsG02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	37.0	3.89e-01	73.8%	98.0%
3o8oF01	3.40.50.450	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.52	36.0	2.86e-01	70.1%	80.0%
1k3xA02	1.10.8.50	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.52	33.0	3.18e-01	75.7%	53.5%
2ld7B00	1.20.1160.11	Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix	0.51	33.0	3.74e-01	80.4%	92.0%
2nvnA00	2.30.31.10	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A	0.51	43.0	4.17e-01	92.5%	97.5%
4fymF00	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.50	38.0	3.17e-01	84.1%	93.8%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2764890	4322.1.1.1 ↗	a+b complex topology › Flu NP-like › Flu NP-like › Flu NP-like › Flu_NP	0.70	63.0	5.82e-01	98.1%	91.0%
3658421	304.28.1.0 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain	0.64	36.0	4.23e-01	84.1%	80.0%
3969345	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.60	45.0	3.66e-01	82.2%	95.0%
4991135	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.57	29.0	2.98e-01	88.8%	49.5%
4947071	304.4.1.0 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel	0.52	30.0	3.37e-01	81.3%	73.8%
4964739	5065.1.1.3 ↗	alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2	0.52	43.0	3.23e-01	93.5%	82.5%
3901998	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.51	35.0	2.60e-01	71.0%	78.1%
3839570	601.51.1.3 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin › FliS_cochap	0.51	35.0	3.23e-01	71.0%	74.5%

D2 medium residues 153-203

PDB

Domain cluster: rep: CPm__YP_009553645__Blackcurrant-associated_closterovirus_1__2338394__D141-190

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01785.23 best	Closter_coat	42.4	6.50e-11	100.0%	24.3%