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CPm
Euk-VirBlackcurrant-associated_closterovirus_1
CPm__YP_009553645__Blackcurrant-associated_closterovirus_1__2338394
Identity
- Accession:
- YP_009553645 ↗
- Protein ID:
- CPm
- Kingdom:
- euk
Quality
77.3
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Closterovirus›
Blackcurrant-associated_closterovirus_1
TaxID: 2338394
Cluster
View cluster (33 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 32-140
Domain cluster:
rep: CP__YP_009162627__Tobacco_virus_1__1692045__D32-141
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01785.23 best | Closter_coat | 64.4 | 1.20e-17 | 100.0% | 54.0% |
D2
medium
residues 141-190
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01785.23 best | Closter_coat | 37.5 | 2.10e-09 | 100.0% | 22.2% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3sf6A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.73 | 51.0 | 3.77e-01 | 74.0% | 46.5% |
| 3ihjA02 | 1.10.287.1970 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 47.0 | 5.13e-01 | 94.0% | 100.0% |
| 1u7kA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.62 | 49.0 | 3.63e-01 | 88.0% | 41.2% |
| 4pkwA02 | 1.10.2030.10 | Mainly Alpha › Orthogonal Bundle › Anthrax toxin lethal factor, domain 3, chain A › Anthrax toxin lethal factor, domain 3, chain A | 0.61 | 48.0 | 4.43e-01 | 84.0% | 68.3% |
| 4crwA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 52.0 | 3.41e-01 | 98.0% | 53.1% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 47.0 | 4.19e-01 | 86.0% | 81.2% |
| 4jgbB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 45.0 | 3.05e-01 | 94.0% | 60.0% |
| 2lpnA00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.51 | 42.0 | 3.45e-01 | 100.0% | 63.8% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3737599 | 2002.1.1.67 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh | 0.76 | 63.0 | 3.63e-01 | 90.0% | 12.9% |
| 3164071 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.64 | 54.0 | 3.41e-01 | 100.0% | 64.1% |
| 3437743 | 3910.1.1.4 ↗ | extended segments › Exosome complex exonuclease RRP6 N-terminal domain › Exosome complex exonuclease RRP6 N-terminal domain › Exosome complex exonuclease RRP6 N-terminal domain › AATF-Che1 | 0.59 | 44.0 | 2.87e-01 | 92.0% | 19.0% |
| 3250373 | 5059.1.1.5 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA | 0.58 | 50.0 | 3.08e-01 | 100.0% | 66.4% |
| 3170771 | 5059.1.1.3 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT | 0.54 | 44.0 | 2.77e-01 | 100.0% | 65.2% |
| 4011501 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.50 | 39.0 | 2.94e-01 | 92.0% | 44.1% |