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CPm
Euk-VirMalus_domestica_virus_A
CPm__YP_010087864__Malus_domestica_virus_A__2664236
Identity
- Accession:
- YP_010087864 ↗
- Protein ID:
- CPm
- Kingdom:
- euk
Quality
56.2
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Velarivirus›
Malus_domestica_virus_A
TaxID: 2664236
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 230-415
D2
high
residues 523-653
Domain cluster:
rep: minor_coat_protein__YP_009140438__Areca_palm_velarivirus_1__1654603__D472-590
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01785.23 best | Closter_coat | 35.3 | 1.00e-08 | 96.2% | 54.5% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ibyD02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 35.0 | 4.17e-01 | 100.0% | 90.5% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 33.0 | 3.81e-01 | 100.0% | 94.3% |
| 2m7aA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.51 | 29.0 | 3.52e-01 | 75.6% | 86.0% |
| 5ly3A02 | 3.30.420.570 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.51 | 45.0 | 3.82e-01 | 100.0% | 93.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5032177 | 1079.1.1.8 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE | 0.58 | 40.0 | 3.43e-01 | 70.2% | 74.8% |
| 3289525 | 1079.1.1.8 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE | 0.52 | 37.0 | 3.18e-01 | 73.3% | 82.4% |
| 3189342 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 38.0 | 3.17e-01 | 77.1% | 90.7% |
| 4649238 | 2484.1.1.178 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA | 0.51 | 46.0 | 3.29e-01 | 100.0% | 40.8% |
| 3911039 | 109.4.1.1558 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2428, TPR_Trm732, TPR_Trm732_C | 0.50 | 43.0 | 2.45e-01 | 95.4% | 11.0% |
D3
medium
residues 21-66_97-161