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CU468217.1CAO99343.1X__00017

Bact-Vir

CU468217.1__CAO99343.1__X__00017

Identity

Accession:: CU468217 ↗
Kingdom:: phage

Quality

78.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Azospirillum_phage_Cd

TaxID: 467481

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-49_105-133

PDB

Domain cluster: representative

CATH (22)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4dciA00	6.10.140.1110	Special › Helix non-globular › Helix Hairpins ›	0.68	45.0	3.43e-01	73.4%	29.9%
3wfwA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.67	45.0	3.49e-01	73.4%	32.6%
1wj7A01	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.67	47.0	4.84e-01	93.8%	80.0%
3hyuA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.66	50.0	3.85e-01	81.2%	71.6%
2z3xA00	6.10.10.80	Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like	0.63	46.0	4.87e-01	82.8%	91.1%
4at7B02	3.30.460.10	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2	0.61	44.0	3.17e-01	78.1%	39.8%
2fh5A01	3.30.450.60	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase ›	0.61	54.0	4.37e-01	100.0%	87.7%
4aflA00	6.10.140.1740	Special › Helix non-globular › Helix Hairpins ›	0.60	41.0	3.46e-01	70.3%	49.0%
4w4kA00	1.10.287.850	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain	0.60	41.0	3.81e-01	71.9%	87.8%
3hr0B01	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.60	40.0	3.78e-01	70.3%	59.5%
2q0oC00	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.59	40.0	3.60e-01	70.3%	57.0%
1vf7A03	1.10.287.470	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.58	39.0	4.02e-01	73.4%	73.3%
2kwhA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	38.0	4.06e-01	70.3%	78.6%
2hsbA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.57	48.0	3.96e-01	96.9%	84.1%
3layF00	1.20.120.1490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.57	39.0	3.62e-01	70.3%	66.7%
1u00A02	1.20.1270.10	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.56	46.0	4.17e-01	100.0%	72.9%
1m62A00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.55	38.0	3.52e-01	75.0%	62.1%
2jroA01	3.30.1910.10	Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain	0.54	37.0	3.74e-01	71.9%	76.9%
2pg0A03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.53	43.0	3.48e-01	100.0%	65.8%
2x9xA04	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	36.0	3.81e-01	71.9%	100.0%
3kt4A02	3.60.130.20	Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Oxoglutarate/iron-dependent oxygenase, C-terminal degradation domain	0.51	35.0	2.31e-01	73.4%	75.3%
4gzrC00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.50	37.0	3.78e-01	79.7%	80.3%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3226769	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.67	55.0	5.38e-01	90.6%	87.1%
3251429	3525.1.1.1 ↗	alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET	0.67	58.0	5.72e-01	100.0%	100.0%
4032129	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.61	48.0	4.85e-01	90.6%	84.6%
3643372	3681.1.1.0 ↗	a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit	0.61	42.0	4.22e-01	71.9%	100.0%
4057034	181.1.1.0 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins	0.61	46.0	4.47e-01	84.4%	77.3%
4033697	632.1.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain	0.61	51.0	4.47e-01	98.4%	88.6%
3364683	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.60	45.0	3.99e-01	78.1%	95.6%
3495183	110.1.1.0 ↗	alpha arrays › DEATH domain › DEATH domain › DEATH domain	0.56	48.0	4.33e-01	96.9%	75.6%
4275437	5063.1.1.12 ↗	alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › ApoO	0.56	42.0	4.38e-01	82.8%	98.3%
3979567	601.7.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain	0.56	44.0	4.03e-01	90.6%	95.6%
3715654	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	39.0	2.45e-01	75.0%	13.2%
3962905	3892.1.1.0 ↗	alpha bundles › Transhydrogeanse domain II › Transhydrogeanse domain II › Transhydrogeanse domain II	0.54	36.0	3.26e-01	70.3%	67.8%
3761028	904.1.1.1 ↗	few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box	0.51	35.0	2.56e-01	73.4%	68.2%
3893414	1021.1.1.0 ↗	a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases	0.50	34.0	2.92e-01	70.3%	59.0%

D2 medium residues 50-104

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2qwtA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.73	52.0	3.60e-01	74.5%	52.7%
2p11A02	1.10.286.50	Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 ›	0.67	51.0	4.63e-01	81.8%	60.8%
4hstA02	1.10.10.2580	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Penicillin Acylase III; Chain A, Domain 2	0.57	41.0	3.89e-01	76.4%	69.2%
3q1xA01	1.10.3130.10	Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1	0.55	44.0	3.44e-01	96.4%	52.5%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3582895	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.71	47.0	4.38e-01	81.8%	54.3%
5018461	1076.1.1.4 ↗	alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › PrsW-protease	0.60	47.0	3.20e-01	90.9%	32.2%
4967576	5059.1.1.0 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter	0.56	42.0	3.29e-01	87.3%	69.7%
3231843	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.52	37.0	3.37e-01	76.4%	62.7%
3239011	198.1.1.1 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2	0.51	37.0	3.32e-01	76.4%	64.0%
5044999	102.1.1.0 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like	0.51	40.0	3.19e-01	92.7%	50.0%