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Cap_protein

Euk-Vir

Cyclovirus_Equ1

Cap_protein__YP_009506316__Cyclovirus_Equ1__1673638

Identity

Accession:
YP_009506316 ↗
Protein ID:
Cap_protein
Kingdom:
euk

Quality

70.4 mean pLDDT

Taxonomy

Shotokuvirae› Cressdnaviricota› Arfiviricetes› Cirlivirales› Circoviridae› Cyclovirus› Cyclovirus_Equ1

TaxID: 1673638

Cluster

View cluster (49 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 60-76_97-190_204-237
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02443.23 best Circo_capsid 49.5 1.00e-12 95.9% 61.2%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jciA00 2.60.120.950 Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein 0.68 65.0 5.83e-01 100.0% 83.7%
2waaA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.67 40.0 4.34e-01 100.0% 69.9%
1sefA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 34.0 3.78e-01 100.0% 60.5%
1sq4A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 33.0 3.49e-01 100.0% 57.1%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 54.0 5.21e-01 100.0% 84.2%
6mnjA01 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 53.0 5.26e-01 100.0% 90.3%
4nhxA02 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.60 39.0 3.35e-01 100.0% 40.9%
1c8nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.60 56.0 4.82e-01 100.0% 73.1%
2xqxA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 43.0 4.32e-01 100.0% 73.5%
1jhjA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 42.0 4.12e-01 100.0% 65.8%
1b35A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 54.0 4.45e-01 100.0% 68.8%
4fy1100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 55.0 4.77e-01 100.0% 73.3%
1smvC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 54.0 4.66e-01 100.0% 75.7%
2kd7A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 41.0 4.05e-01 100.0% 66.7%
7jsdA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.58 40.0 3.34e-01 100.0% 39.7%
4cucA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 38.0 4.20e-01 100.0% 81.9%
1bev100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 52.0 4.21e-01 100.0% 57.5%
1yi9A01 2.60.120.310 Mainly Beta › Sandwich › Jelly Rolls › Copper type II, ascorbate-dependent monooxygenase, N-terminal domain 0.55 44.0 4.34e-01 100.0% 79.5%
2b5iC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 29.0 3.44e-01 98.6% 77.1%
1pgl100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 49.0 4.53e-01 100.0% 79.5%
2orzA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 39.0 3.88e-01 100.0% 71.4%
7uwjC01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.53 29.0 3.20e-01 98.6% 62.8%
2zxqA05 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 41.0 3.71e-01 100.0% 60.6%
2xliA01 3.30.70.2540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 0.52 30.0 3.01e-01 98.6% 52.6%
8alzB04 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 32.0 3.62e-01 98.6% 80.9%
2rdqA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.52 43.0 3.54e-01 100.0% 49.4%
2gysA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 30.0 3.48e-01 98.6% 84.2%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5041729 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.67 42.0 4.38e-01 100.0% 68.1%
5038857 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 41.0 4.98e-01 97.9% 100.0%
1179973 10.12.1.27 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_3 0.62 33.0 3.36e-01 100.0% 49.0%
3741587 10.12.1.44 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ofd1_CTDD 0.61 43.0 3.55e-01 100.0% 39.6%
3969738 10.32.1.276 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27052 0.61 43.0 4.09e-01 100.0% 63.0%
1713715 10.2.1.69 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.60 55.0 4.38e-01 100.0% 55.4%
1411394 10.12.1.44 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ofd1_CTDD 0.59 39.0 3.36e-01 100.0% 42.0%
5050652 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.58 39.0 4.00e-01 100.0% 69.3%
4882276 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.57 52.0 4.72e-01 99.3% 85.8%
4963992 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 4.28e-01 99.3% 80.7%
3299765 11.1.5.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › muHD 0.56 37.0 4.20e-01 100.0% 91.4%
3744243 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.56 38.0 4.22e-01 98.6% 90.0%
3505636 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.55 41.0 4.47e-01 100.0% 94.2%
3924069 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.54 42.0 4.59e-01 99.3% 97.5%
4870262 11.1.1.318 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Rb_N 0.54 31.0 3.69e-01 98.6% 84.0%
5056119 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 4.46e-01 100.0% 88.1%
2884908 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 40.0 3.74e-01 100.0% 62.1%
3783394 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 38.0 4.10e-01 100.0% 88.3%
4943486 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 40.0 4.26e-01 98.6% 91.2%
3190646 10.32.1.23 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Bac_rhamnosid 0.52 38.0 4.00e-01 98.6% 83.8%
3601261 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 45.0 4.11e-01 100.0% 69.7%
1877809 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 32.0 3.13e-01 97.9% 55.6%
4980543 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 32.0 3.65e-01 88.3% 85.7%
3476250 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.51 38.0 3.50e-01 100.0% 59.5%
3906025 10.32.1.189 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CAND6-7_N 0.50 45.0 4.33e-01 100.0% 92.9%
D2 medium residues 46-59_77-96_191-203_238-249
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dwcB02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.58 45.0 4.56e-01 89.8% 88.1%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 45.0 3.90e-01 91.5% 94.9%
1vajA02 3.30.1490.150 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 0.55 44.0 4.12e-01 89.8% 98.6%
2hc8A00 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.55 41.0 3.39e-01 96.6% 43.4%
2gqtA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 46.0 3.71e-01 96.6% 76.9%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 39.0 2.95e-01 79.7% 65.1%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.69e-01 96.6% 63.2%
2a8eA00 3.30.930.20 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Protein of unknown function DUF1054 0.54 44.0 3.11e-01 94.9% 46.7%
2e3vA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.16e-01 76.3% 60.2%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.51 32.0 3.29e-01 89.8% 65.5%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.51 38.0 3.88e-01 84.7% 98.3%
2w3sA04 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 41.0 3.41e-01 94.9% 89.5%
1ffvC03 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 39.0 3.31e-01 91.5% 89.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4960962 10.11.1.0 ↗ beta sandwiches › jelly-roll › Thiamin pyrophosphokinase, substrate-binding domain › Thiamin pyrophosphokinase, substrate-binding domain 0.60 50.0 4.49e-01 96.6% 81.2%
3958275 3430.1.1.0 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain 0.60 42.0 3.66e-01 76.3% 58.9%
3954416 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.57 39.0 3.26e-01 71.2% 49.5%
3535416 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.54 43.0 3.33e-01 93.2% 87.6%
4928817 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 39.0 2.96e-01 79.7% 69.3%
4902667 1.1.5.18 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.53 38.0 2.77e-01 79.7% 45.5%
4960214 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.53 39.0 2.90e-01 79.7% 70.6%
5012954 632.2.1.40 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF515 0.52 39.0 3.01e-01 83.1% 71.4%
5052654 7533.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK 0.50 35.0 2.44e-01 76.3% 58.7%