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Capsid_portal_protein

Euk-Vir

Eptesicus_fuscus_gammaherpesvirus

Capsid_portal_protein__YP_009552506__Eptesicus_fuscus_gammaherpesvirus__2035399

Identity

Accession:
YP_009552506 ↗
Protein ID:
Capsid_portal_protein
Kingdom:
euk

Quality

73.5 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Eptesicus_fuscus_gammaherpesvirus

TaxID: 2035399

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-274_508-576
PDB
Domain cluster: rep: U76__NP_042969__Human_betaherpesvirus_6A__32603__D57-282_547-593
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01763.23 best Herpes_UL6 245.9 1.10e-72 74.0% 41.1%
PF01763.23 Herpes_UL6 72.7 3.20e-20 22.7% 12.4%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.58 17.0 3.30e-01 78.3% 91.8%
1tu9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 21.0 3.01e-01 82.6% 80.2%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5001242 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.54 23.0 3.23e-01 83.2% 79.3%
4473674 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 21.0 3.37e-01 96.1% 95.5%
3934918 1075.1.1.4 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 0.53 27.0 2.82e-01 76.0% 51.1%
5037362 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 23.0 2.96e-01 78.6% 65.0%
3345094 3615.1.1.21 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › BPS1 0.51 35.0 3.89e-01 85.5% 86.3%
3424324 3684.1.1.2 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 0.51 30.0 3.64e-01 86.8% 85.5%
3243897 3684.1.1.0 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.50 25.0 3.55e-01 77.0% 100.0%