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Capsid_protein,_VP1054
Euk-VirPerigonia_lusca_single_nucleopolyhedrovirus
Capsid_protein,_VP1054__YP_009165649__Perigonia_lusca_single_nucleopolyhedrovirus__1675865
Identity
- Accession:
- YP_009165649 ↗
- Protein ID:
- Capsid_protein,_VP1054
- Kingdom:
- euk
Quality
71.9
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Perigonia_lusca_single_nucleopolyhedrovirus
TaxID: 1675865
Cluster
View cluster (46 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 42-49_61-180_185-192
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05789.17 best | Baculo_VP1054 | 152.1 | 3.80e-44 | 100.0% | 37.6% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4anoA00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.62 | 51.0 | 4.43e-01 | 92.6% | 57.9% |
| 4annA00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.60 | 46.0 | 4.23e-01 | 92.6% | 62.5% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 32.0 | 3.99e-01 | 83.8% | 87.3% |
| 1f0xA04 | 3.30.1370.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › D-lactate dehydrogenase, cap domain, subdomain 2 | 0.58 | 34.0 | 4.14e-01 | 88.2% | 91.8% |
| 4binA01 | 2.60.40.3500 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 37.0 | 3.93e-01 | 83.8% | 73.3% |
| 3eoqB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.58 | 44.0 | 4.02e-01 | 79.4% | 93.4% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 33.0 | 3.89e-01 | 84.6% | 80.9% |
| 2o30A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 32.0 | 4.03e-01 | 80.9% | 95.1% |
| 4xeaA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.54 | 44.0 | 3.95e-01 | 87.5% | 93.2% |
| 3f62A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 37.0 | 4.17e-01 | 82.4% | 89.8% |
| 4nnzA01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.53 | 41.0 | 3.63e-01 | 80.9% | 78.5% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3652778 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.66 | 58.0 | 4.25e-01 | 94.1% | 46.2% |
| 4262988 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.66 | 35.0 | 4.36e-01 | 84.6% | 82.4% |
| 4553885 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.65 | 36.0 | 4.54e-01 | 86.0% | 91.3% |
| 1815427 | 319.3.1.1 ↗ | beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN | 0.65 | 37.0 | 4.15e-01 | 83.8% | 71.3% |
| 5035383 | 305.2.1.3 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › PF27806 | 0.63 | 40.0 | 4.83e-01 | 100.0% | 96.7% |
| 3315331 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.62 | 37.0 | 4.55e-01 | 91.2% | 97.5% |
| 3655963 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 32.0 | 4.32e-01 | 83.8% | 97.1% |
| 3655967 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 37.0 | 4.36e-01 | 77.2% | 85.3% |
| 3581781 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.61 | 35.0 | 4.08e-01 | 77.2% | 80.0% |
| 3312923 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.60 | 38.0 | 4.41e-01 | 90.4% | 89.5% |
| 3311358 | 304.8.1.67 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7377 | 0.60 | 38.0 | 3.90e-01 | 91.9% | 65.4% |
| 3317802 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.60 | 38.0 | 4.43e-01 | 90.4% | 90.5% |
| 3853658 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 32.0 | 4.22e-01 | 77.9% | 98.6% |
| 3643150 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 35.0 | 4.35e-01 | 77.9% | 95.3% |
| 3452017 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 34.0 | 4.23e-01 | 90.4% | 97.5% |
| 3666529 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 35.0 | 4.20e-01 | 85.3% | 100.0% |
| 3281355 | 304.12.1.12 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › GDH_ACT2 | 0.55 | 39.0 | 4.32e-01 | 90.4% | 93.3% |
| 3305653 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.55 | 29.0 | 3.72e-01 | 86.8% | 95.7% |
| 3675774 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.55 | 34.0 | 4.05e-01 | 91.9% | 97.6% |
| 3285931 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 36.0 | 3.87e-01 | 85.3% | 80.0% |
| 3666577 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.53 | 35.0 | 3.98e-01 | 90.4% | 90.9% |
| 3451456 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.53 | 34.0 | 4.00e-01 | 91.2% | 93.7% |
| 3224993 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.53 | 39.0 | 4.27e-01 | 82.4% | 93.6% |
| 3308868 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 38.0 | 4.19e-01 | 91.9% | 97.1% |
| 3810458 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 33.0 | 3.87e-01 | 89.7% | 92.6% |
| 3713000 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.52 | 36.0 | 3.92e-01 | 86.0% | 87.3% |
| 3306024 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 33.0 | 3.54e-01 | 91.9% | 79.1% |
D2
medium
residues 223-229_231-305_335-352
Domain cluster:
rep: vp1054__YP_009049873__Peridroma_alphabaculovirus__1346829__D218-273_316-331
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05789.17 best | Baculo_VP1054 | 166.0 | 2.30e-48 | 100.0% | 35.8% |