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Carm_scaffold_0_prodigal-single.1__X__X__00015
Bact-VirCarm_scaffold_0_prodigal-single.1__X__X__00015
Identity
- Kingdom:
- phage
Quality
79.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-151
Domain cluster:
rep: MF063068.1__ARV77207.1__NOXIFER_36__00036__D4-151
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3keyA02 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.72 | 32.0 | 4.10e-01 | 100.0% | 69.3% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.69 | 21.0 | 3.00e-01 | 100.0% | 53.3% |
| 2ln3A00 | 3.30.110.140 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.66 | 25.0 | 3.21e-01 | 100.0% | 57.8% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.63 | 35.0 | 4.16e-01 | 81.4% | 80.4% |
| 2vixA02 | 1.10.150.630 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.62 | 38.0 | 4.65e-01 | 82.1% | 97.8% |
| 2cyyA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.61 | 21.0 | 2.61e-01 | 100.0% | 43.2% |
| 2xhcA01 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.60 | 27.0 | 3.29e-01 | 71.0% | 62.1% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.60 | 30.0 | 3.64e-01 | 97.9% | 73.4% |
| 2yx1A01 | 3.30.70.2580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 21.0 | 2.98e-01 | 100.0% | 63.6% |
| 1t94B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.53 | 25.0 | 2.71e-01 | 70.3% | 49.6% |
| 1biqA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.53 | 38.0 | 2.91e-01 | 72.4% | 77.6% |
| 2zihC00 | 1.10.3630.10 | Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like | 0.51 | 40.0 | 3.28e-01 | 83.4% | 82.1% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.51 | 29.0 | 3.61e-01 | 90.3% | 97.5% |
| 2hnkA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 31.0 | 2.67e-01 | 78.6% | 38.9% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3839835 | 3962.2.1.0 ↗ | alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › Helical domain in type ISP restriction-modification enzymes › Helical domain in type ISP restriction-modification enzymes | 0.56 | 46.0 | 4.88e-01 | 100.0% | 99.2% |
| 4132486 | 101.1.2.187 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_C | 0.55 | 34.0 | 4.19e-01 | 80.0% | 100.0% |
| 3987427 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.54 | 37.0 | 3.43e-01 | 70.3% | 97.4% |
| 3946399 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 34.0 | 3.58e-01 | 79.3% | 70.0% |
| 3724857 | 3241.1.1.1 ↗ | alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › GPP34 | 0.53 | 40.0 | 3.27e-01 | 79.3% | 72.5% |
| 3169173 | 3241.1.1.1 ↗ | alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › GPP34 | 0.52 | 40.0 | 3.29e-01 | 82.8% | 80.0% |
| 3686159 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 36.0 | 3.25e-01 | 72.4% | 94.4% |
| 3421751 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 36.0 | 3.86e-01 | 80.7% | 84.0% |
D2
high
residues 154-281
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 39.0 | 4.73e-01 | 93.8% | 96.3% |
| 1cpcB00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.60 | 45.0 | 4.09e-01 | 78.9% | 73.8% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 42.0 | 4.49e-01 | 75.0% | 88.4% |
| 3ezjA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.58 | 24.0 | 3.21e-01 | 85.9% | 69.1% |
| 4gf3A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.55 | 30.0 | 3.05e-01 | 100.0% | 52.0% |
| 6vp6A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 30.0 | 3.53e-01 | 97.7% | 77.1% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.51 | 34.0 | 3.88e-01 | 82.8% | 91.6% |
| 3nqwA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.51 | 36.0 | 3.28e-01 | 73.4% | 63.5% |
| 2rkvA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.51 | 37.0 | 3.16e-01 | 75.0% | 83.2% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4565829 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.60 | 42.0 | 3.72e-01 | 70.3% | 90.6% |
| 4974454 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.54 | 45.0 | 3.72e-01 | 89.1% | 82.6% |
| 4363328 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.52 | 36.0 | 4.04e-01 | 70.3% | 98.9% |
D3
medium
residues 286-320
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lujB01 | 1.10.10.490 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Beta-catenin-interacting ICAT | 0.88 | 76.0 | 6.66e-01 | 100.0% | 66.0% |
| 4etsA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 52.0 | 3.81e-01 | 71.4% | 29.9% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.75 | 64.0 | 4.79e-01 | 97.1% | 73.9% |
| 3ccgA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.75 | 60.0 | 3.88e-01 | 100.0% | 20.6% |
| 2p6nA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 53.0 | 3.47e-01 | 82.9% | 17.5% |
| 4f92B10 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.72 | 60.0 | 4.02e-01 | 97.1% | 44.1% |
| 1y74A00 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.72 | 58.0 | 5.16e-01 | 100.0% | 61.4% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.72 | 51.0 | 3.82e-01 | 82.9% | 29.7% |
| 1sz9C00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.70 | 58.0 | 3.86e-01 | 94.3% | 32.1% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.69 | 57.0 | 3.72e-01 | 91.4% | 23.1% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 55.0 | 4.36e-01 | 100.0% | 44.0% |
| 2qm8A03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.67 | 54.0 | 4.46e-01 | 91.4% | 49.2% |
| 2ogiB00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.66 | 50.0 | 3.30e-01 | 100.0% | 21.8% |
| 1vw4L02 | 1.10.246.170 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.65 | 58.0 | 4.31e-01 | 100.0% | 56.5% |
| 2z6vA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 49.0 | 2.84e-01 | 94.3% | 8.2% |
| 1ak2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 48.0 | 3.03e-01 | 88.6% | 14.5% |
| 1xdxA01 | 3.30.1140.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 | 0.59 | 48.0 | 3.61e-01 | 100.0% | 96.0% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4508282 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.96 | 82.0 | 5.14e-01 | 94.3% | 20.6% |
| 3598903 | 1038.1.1.0 ↗ | alpha complex topology › Pre-mRNA-splicing factor 8 N-terminal domain › Pre-mRNA-splicing factor 8 N-terminal domain › Pre-mRNA-splicing factor 8 N-terminal domain | 0.91 | 80.0 | 4.22e-01 | 100.0% | 4.4% |
| 3373946 | 192.19.1.0 ↗ | alpha bundles › Long alpha-hairpin › YnzC-like › YnzC-like | 0.89 | 76.0 | 7.66e-01 | 100.0% | 97.1% |
| 3948631 | 192.29.1.56 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › YihI | 0.89 | 82.0 | 6.91e-01 | 100.0% | 63.6% |
| 3379868 | 148.1.3.277 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › LETM1_RBD | 0.88 | 76.0 | 5.81e-01 | 100.0% | 46.3% |
| 3203010 | 605.1.1.139 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › LETM1_RBD | 0.87 | 75.0 | 5.37e-01 | 100.0% | 35.0% |
| 3583169 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.87 | 74.0 | 5.63e-01 | 100.0% | 42.5% |
| 3935982 | 109.4.1.17 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin | 0.83 | 70.0 | 3.99e-01 | 100.0% | 9.5% |
| 4968589 | 601.7.1.16 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN_Swt1 | 0.82 | 68.0 | 4.57e-01 | 100.0% | 25.7% |
| 3260684 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.79 | 65.0 | 5.74e-01 | 100.0% | 61.8% |
| 4294930 | 375.1.1.141 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4674 | 0.79 | 70.0 | 4.72e-01 | 100.0% | 28.0% |
| 3185917 | 375.1.9.12 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › Wbp11 | 0.79 | 66.0 | 5.04e-01 | 100.0% | 43.5% |
| 5040578 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.78 | 67.0 | 5.51e-01 | 100.0% | 64.6% |
| 3497418 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.75 | 64.0 | 4.61e-01 | 97.1% | 68.0% |
| 3734558 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 63.0 | 3.33e-01 | 100.0% | 7.5% |
| 4975945 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 61.0 | 3.81e-01 | 100.0% | 39.5% |
| 4209030 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.72 | 63.0 | 4.39e-01 | 100.0% | 36.0% |
| 3686172 | 109.4.1.496 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec5 | 0.70 | 57.0 | 3.12e-01 | 100.0% | 5.7% |
| 3840952 | 601.19.1.39 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › LIN9_C | 0.70 | 62.0 | 4.81e-01 | 100.0% | 54.7% |
| 3180405 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.70 | 59.0 | 3.27e-01 | 100.0% | 27.9% |
| 3477418 | 4992.1.1.12 ↗ | extended segments › RelB-like › RelB-like › RelB-like › LIN9_C | 0.70 | 61.0 | 4.45e-01 | 100.0% | 57.9% |
| 4124492 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.70 | 60.0 | 4.25e-01 | 100.0% | 36.5% |
| 4211999 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.68 | 59.0 | 3.95e-01 | 97.1% | 85.4% |
| 4130073 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.68 | 61.0 | 4.29e-01 | 100.0% | 71.8% |
| 3417174 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.67 | 60.0 | 3.97e-01 | 100.0% | 25.7% |
| 3468553 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.67 | 54.0 | 3.56e-01 | 91.4% | 21.6% |
| 3754639 | 150.5.1.106 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C | 0.66 | 51.0 | 4.01e-01 | 91.4% | 95.3% |
| 3941013 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.66 | 54.0 | 3.22e-01 | 91.4% | 12.7% |
| 4343661 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.66 | 55.0 | 3.96e-01 | 100.0% | 32.5% |
| 4634964 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.64 | 56.0 | 4.05e-01 | 100.0% | 33.6% |