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Carm_scaffold_0_prodigal-single.1__X__X__00034
Bact-VirCarm_scaffold_0_prodigal-single.1__X__X__00034
Identity
- Kingdom:
- phage
Quality
72.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 90-132
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3emzA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.68 | 54.0 | 3.16e-01 | 86.0% | 23.0% |
| 2ar0A01 | 1.20.1260.30 | Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain | 0.67 | 53.0 | 3.71e-01 | 90.7% | 77.3% |
| 3ilxA02 | 1.10.287.2170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 49.0 | 4.97e-01 | 88.4% | 88.6% |
| 3htmA02 | 6.10.250.3030 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.66 | 47.0 | 4.83e-01 | 79.1% | 82.5% |
| 3uhjC01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 47.0 | 3.26e-01 | 83.7% | 50.0% |
| 2nr4A02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.61 | 45.0 | 4.26e-01 | 88.4% | 69.0% |
| 6c5cA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 44.0 | 3.00e-01 | 97.7% | 19.8% |
| 3wqoA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.58 | 47.0 | 2.90e-01 | 90.7% | 28.4% |
| 4qmhA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.58 | 44.0 | 2.91e-01 | 97.7% | 35.2% |
| 3h3aA04 | 1.10.246.80 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.57 | 42.0 | 4.06e-01 | 86.0% | 70.0% |
| 3wgtA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 44.0 | 2.90e-01 | 90.7% | 53.0% |
| 1tc5C00 | 3.50.80.10 | Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-tyrosyl-tRNA(Tyr) deacylase | 0.56 | 39.0 | 2.60e-01 | 74.4% | 42.5% |
| 3okpA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.52 | 43.0 | 2.85e-01 | 97.7% | 55.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3321994 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.83 | 62.0 | 4.28e-01 | 81.4% | 25.7% |
| 3300208 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.80 | 59.0 | 4.34e-01 | 81.4% | 30.4% |
| 3269762 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.67 | 47.0 | 3.36e-01 | 76.7% | 24.4% |
| 4990831 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.66 | 52.0 | 3.12e-01 | 83.7% | 13.8% |
| 3899752 | 3922.1.1.193 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Amo1_N | 0.66 | 54.0 | 4.40e-01 | 100.0% | 66.7% |
| 3703778 | 2004.5.1.11 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › SPA | 0.63 | 53.0 | 3.39e-01 | 97.7% | 71.8% |
| 4309936 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.61 | 52.0 | 3.85e-01 | 100.0% | 42.5% |
| 5016269 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.61 | 52.0 | 3.10e-01 | 100.0% | 14.8% |
| 3315602 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.61 | 47.0 | 3.77e-01 | 90.7% | 39.0% |
| 3224232 | 3912.1.1.1 ↗ | extended segments › Intraflagellar transport protein 46 C-terminal domain › Intraflagellar transport protein 46 C-terminal domain › Intraflagellar transport protein 46 C-terminal domain › IFT46_B_C | 0.59 | 46.0 | 4.02e-01 | 93.0% | 56.0% |
| 3800788 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.58 | 46.0 | 3.80e-01 | 90.7% | 91.3% |
| 3228081 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 46.0 | 4.29e-01 | 90.7% | 100.0% |
| 4992249 | 7545.1.1.1 ↗ | a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE | 0.57 | 48.0 | 3.46e-01 | 95.3% | 67.4% |