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Carm_scaffold_0_prodigal-single.1__X__X__00134

Bact-Vir

Carm_scaffold_0_prodigal-single.1__X__X__00134

Identity

Kingdom:
phage

Quality

85.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-141
PDB
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.87 29.0 4.67e-01 75.6% 75.9%
3mcaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.75 48.0 5.13e-01 82.2% 73.7%
1xe1A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.75 46.0 5.54e-01 74.8% 91.2%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.74 42.0 4.64e-01 89.6% 68.8%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.72 44.0 5.42e-01 74.1% 100.0%
4g6iB01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 44.0 5.26e-01 76.3% 93.3%
3a35A02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 43.0 5.07e-01 74.8% 88.0%
1i8dA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 43.0 5.20e-01 76.3% 93.3%
4g6iC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 43.0 5.08e-01 76.3% 88.3%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.70 50.0 5.57e-01 81.5% 94.3%
1kzlA02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 43.0 4.94e-01 76.3% 83.2%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.69 47.0 5.33e-01 80.7% 90.4%
3a35A01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.68 43.0 5.14e-01 77.8% 93.5%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.68 30.0 4.12e-01 76.3% 82.1%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.68 37.0 4.40e-01 77.8% 78.0%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.67 46.0 5.29e-01 80.7% 97.9%
1pj5A05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.65 35.0 4.44e-01 77.8% 89.7%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 48.0 5.12e-01 77.0% 98.3%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 36.0 4.05e-01 84.4% 70.2%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 47.0 4.86e-01 76.3% 93.8%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 46.0 5.27e-01 75.6% 100.0%
3wbiA04 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 56.0 5.53e-01 94.8% 95.2%
5ylyA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 44.0 4.80e-01 74.8% 96.4%
5jm6A02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.58 42.0 4.17e-01 75.6% 100.0%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 33.0 4.14e-01 88.1% 96.2%
1n08A00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.57 48.0 4.62e-01 91.1% 90.9%
3bpnC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 4.39e-01 87.4% 95.0%
1ulvA04 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 48.0 3.98e-01 93.3% 84.2%
5mj3A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 33.0 3.92e-01 87.4% 95.4%
2eefA01 2.60.40.2440 Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain 0.53 35.0 3.64e-01 86.7% 71.7%
1p7hL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.92e-01 88.1% 89.7%
4beuA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.52 43.0 3.98e-01 89.6% 73.7%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.51 38.0 4.04e-01 85.2% 86.1%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.90e-01 88.1% 83.7%
1axiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.90e-01 87.4% 96.0%
3h6zA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 34.0 3.71e-01 77.8% 83.0%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3237729 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.77 51.0 5.70e-01 80.0% 85.7%
3210962 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.76 52.0 6.09e-01 96.3% 98.9%
3256764 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.76 55.0 5.62e-01 74.1% 98.5%
3786548 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 49.0 5.83e-01 87.4% 97.9%
3349972 1.1.7.55 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF6469 0.73 55.0 5.67e-01 78.5% 93.8%
3237442 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 51.0 5.87e-01 79.3% 99.0%
3243970 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 51.0 5.87e-01 81.5% 99.0%
3688095 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 52.0 5.53e-01 75.6% 100.0%
4602848 1.1.7.5 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.71 42.0 5.08e-01 80.7% 88.9%
3574784 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 47.0 5.11e-01 78.5% 81.8%
3256920 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 52.0 5.39e-01 76.3% 99.2%
3787268 1.1.7.5 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.70 45.0 4.65e-01 76.3% 68.8%
4034156 1.1.7.5 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.70 43.0 5.10e-01 76.3% 91.1%
4014424 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 44.0 4.79e-01 76.3% 74.8%
3626966 1.1.7.90 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.69 48.0 5.28e-01 73.3% 86.4%
3265100 1.1.7.90 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.69 50.0 5.45e-01 74.8% 98.3%
3741921 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.69 48.0 5.37e-01 74.8% 91.4%
3262455 1.1.7.90 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.69 49.0 5.68e-01 73.3% 100.0%
3299946 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.69 51.0 5.48e-01 76.3% 91.3%
3426699 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 50.0 5.27e-01 74.1% 90.0%
3247934 1.1.7.41 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.69 46.0 5.35e-01 74.8% 96.8%
3931783 1.1.7.41 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.68 46.0 5.28e-01 73.3% 96.8%
3605269 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 48.0 5.45e-01 80.0% 98.0%
3384073 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 49.0 5.17e-01 74.8% 99.2%
3973594 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 44.0 5.23e-01 75.6% 98.9%
3423505 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 45.0 5.32e-01 72.6% 96.8%
3741028 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.67 47.0 5.27e-01 76.3% 92.4%
376641 1.1.7.5 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.67 43.0 5.03e-01 74.1% 92.5%
3240679 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 50.0 4.75e-01 77.8% 68.8%
3805726 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 48.0 5.11e-01 74.8% 99.2%
3110426 1.1.7.23 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_9 0.66 48.0 5.36e-01 75.6% 100.0%
4230632 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.66 33.0 3.32e-01 77.0% 47.4%
4492958 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 49.0 5.44e-01 76.3% 100.0%
3434465 1.1.7.55 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF6469 0.66 47.0 4.98e-01 73.3% 95.0%
3788348 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.66 50.0 5.34e-01 78.5% 97.4%
153856 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.65 48.0 5.10e-01 77.0% 96.7%
3615287 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 47.0 5.21e-01 73.3% 96.2%
3193183 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.65 48.0 5.07e-01 76.3% 100.0%
3688711 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.65 47.0 5.12e-01 76.3% 90.9%
4944696 1.1.7.138 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NAD_binding_1 0.65 46.0 5.25e-01 76.3% 99.0%
3744112 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.65 48.0 5.18e-01 76.3% 96.4%
4366786 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.65 46.0 5.04e-01 76.3% 90.0%
4278681 1.1.8.3 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.65 37.0 4.48e-01 78.5% 88.2%
3367701 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 45.0 5.11e-01 72.6% 94.3%
3685286 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.64 46.0 4.69e-01 75.6% 100.0%
3810482 1.1.7.46 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.64 46.0 4.67e-01 79.3% 74.8%
3496352 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 47.0 4.95e-01 77.0% 96.7%
4441129 1.1.7.91 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.63 48.0 5.09e-01 85.2% 89.2%
4965843 2.4.1.19 beta barrels › OB-fold › MOP-like › MOP-like › DUF7861 0.63 36.0 4.24e-01 74.8% 79.8%
4946101 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 46.0 5.12e-01 76.3% 98.1%
98 1.1.7.5 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.62 42.0 4.51e-01 80.7% 81.4%
3932819 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.62 46.0 4.91e-01 77.0% 97.4%
3170371 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.62 46.0 4.90e-01 78.5% 100.0%
4195538 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.62 42.0 4.88e-01 76.3% 100.0%
5024522 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 49.0 4.54e-01 96.3% 67.9%
4311301 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.61 45.0 4.88e-01 75.6% 98.2%
4011994 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 45.0 4.92e-01 76.3% 99.1%
5055679 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 32.0 4.14e-01 73.3% 94.3%
4929404 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.61 45.0 4.99e-01 77.0% 100.0%
3269002 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 42.0 4.62e-01 87.4% 92.4%
4959074 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 49.0 5.18e-01 92.6% 99.2%
3830803 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 38.0 4.31e-01 92.6% 86.7%
3481770 4.1.1.220 beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.56 33.0 4.01e-01 84.4% 95.0%
3324862 11.1.1.122 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.56 41.0 4.36e-01 86.7% 88.7%
4400928 1.1.7.10 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.54 46.0 4.82e-01 99.3% 99.2%
5007485 304.165.1.4 a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 › HVO_2525_N 0.54 43.0 4.25e-01 97.8% 78.6%
3841983 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.53 35.0 3.92e-01 88.1% 86.7%
3893461 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 35.0 3.97e-01 88.1% 90.0%
3900933 11.1.1.54 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.51 36.0 3.56e-01 87.4% 68.6%
3228459 11.1.1.214 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N 0.51 34.0 3.64e-01 87.4% 80.0%
5029597 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 33.0 3.72e-01 87.4% 85.7%
D2 high residues 153-236
PDB