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Carm_scaffold_0_prodigal-single.1__X__X__00230

Bact-Vir

Carm_scaffold_0_prodigal-single.1__X__X__00230

Identity

Kingdom:
phage

Quality

85.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-111
PDB
Domain cluster: rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00670__D5-100
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04386.19 best SspB 30.2 6.10e-07 93.1% 59.6%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.92 83.0 8.18e-01 100.0% 89.6%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.71 65.0 6.22e-01 100.0% 87.2%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 38.0 4.67e-01 84.3% 100.0%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.63 41.0 4.22e-01 87.3% 69.5%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 40.0 4.67e-01 88.2% 100.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 34.0 4.09e-01 90.2% 90.8%
2fpnA02 3.30.360.40 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › YwmB-like 0.57 29.0 3.50e-01 100.0% 75.4%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 37.0 4.13e-01 81.4% 92.0%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 35.0 3.84e-01 95.1% 81.2%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.85e-01 91.2% 64.4%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.52 37.0 2.60e-01 76.5% 57.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
605 4.1.2.1 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › SspB 0.92 83.0 8.18e-01 100.0% 89.6%
165392 4.1.2.1 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › SspB 0.72 66.0 6.23e-01 100.0% 84.2%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 43.0 5.19e-01 90.2% 100.0%
4270910 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 44.0 5.18e-01 86.3% 95.7%
3281945 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 47.0 4.97e-01 92.2% 83.3%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 43.0 4.58e-01 92.2% 74.4%
3456496 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.66 41.0 3.95e-01 89.2% 53.9%
4087011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 4.94e-01 91.2% 82.1%
4141828 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 44.0 4.95e-01 90.2% 94.6%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 44.0 4.91e-01 90.2% 94.6%
3941391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 37.0 4.42e-01 82.4% 95.0%
4946972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 40.0 4.22e-01 85.3% 73.3%
3879653 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.61 39.0 4.51e-01 100.0% 94.3%
4973804 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 34.0 3.86e-01 79.4% 74.7%
3598125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 37.0 4.17e-01 82.4% 84.0%
4674170 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.60 43.0 4.09e-01 89.2% 64.2%
3604442 205.1.1.87 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › HcyBio 0.55 45.0 4.01e-01 89.2% 83.9%
3416068 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.51 41.0 3.59e-01 100.0% 57.4%
4975478 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.51 38.0 4.06e-01 87.3% 95.3%
3931122 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 35.0 3.64e-01 72.5% 97.9%