←Back to structures
Clas52
Euk-VirClostera_anastomosis_granulovirus_B
Clas52__YP_009505994__Clostera_anastomosis_granulovirus_B__1986290
Identity
- Accession:
- YP_009505994 ↗
- Protein ID:
- Clas52
- Kingdom:
- euk
Quality
78.8
mean pLDDT
Taxonomy
TaxID: 1986290
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-119
Domain cluster:
rep: unknown_similar_to_AMEV225__YP_008004632__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D1-101
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19234.5 best | DUF5887 | 59.2 | 6.00e-16 | 100.0% | 73.5% |
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.75 | 47.0 | 5.34e-01 | 74.7% | 84.0% |
| 3u28C00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.67 | 46.0 | 4.80e-01 | 77.8% | 76.1% |
| 3girA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.67 | 39.0 | 4.28e-01 | 98.0% | 71.8% |
| 5hmaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.66 | 53.0 | 5.28e-01 | 86.9% | 90.4% |
| 3k6yA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.66 | 52.0 | 5.15e-01 | 86.9% | 91.6% |
| 4m9fA00 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.64 | 57.0 | 4.51e-01 | 98.0% | 51.5% |
| 1agjA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 49.0 | 4.41e-01 | 84.8% | 64.9% |
| 1a1rA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 46.0 | 4.91e-01 | 85.9% | 92.9% |
| 4yo1A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 44.0 | 4.58e-01 | 83.8% | 85.4% |
| 1e62A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 42.0 | 3.97e-01 | 76.8% | 88.3% |
| 3p26A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 45.0 | 4.40e-01 | 84.8% | 92.7% |
| 4b6eB01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 51.0 | 4.08e-01 | 100.0% | 63.4% |
| 2v3mA00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.57 | 45.0 | 4.59e-01 | 93.9% | 88.3% |
| 6toaF01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.57 | 43.0 | 3.97e-01 | 80.8% | 100.0% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.56 | 44.0 | 4.30e-01 | 84.8% | 88.3% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.56 | 41.0 | 4.49e-01 | 76.8% | 100.0% |
| 7zvsB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 40.0 | 4.02e-01 | 75.8% | 73.7% |
| 5uj1A03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.55 | 38.0 | 3.18e-01 | 70.7% | 83.0% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.54 | 45.0 | 4.33e-01 | 92.9% | 98.2% |
| 5fcrC02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 42.0 | 4.10e-01 | 83.8% | 89.7% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.54 | 25.0 | 3.06e-01 | 71.7% | 68.4% |
| 2p5zX01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.54 | 41.0 | 3.54e-01 | 83.8% | 97.0% |
| 2kcaA00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.54 | 40.0 | 3.89e-01 | 78.8% | 93.6% |
| 7cayA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.54 | 37.0 | 3.77e-01 | 72.7% | 76.0% |
| 2epbA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 30.0 | 3.44e-01 | 75.8% | 77.9% |
| 5h5zA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 33.0 | 3.53e-01 | 70.7% | 72.7% |
| 3of6E00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 35.0 | 3.46e-01 | 71.7% | 98.1% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2504416 | 1.4.1.1 ↗ | beta barrels › cradle loop barrel › N-terminal domain of poxin › N-terminal domain of poxin › Baculo_p26 | 0.83 | 74.0 | 6.96e-01 | 100.0% | 81.0% |
| 3071469 | 1.4.1.0 ↗ | beta barrels › cradle loop barrel › N-terminal domain of poxin › N-terminal domain of poxin | 0.82 | 73.0 | 6.93e-01 | 100.0% | 81.7% |
| 4501706 | 1.4.1.0 ↗ | beta barrels › cradle loop barrel › N-terminal domain of poxin › N-terminal domain of poxin | 0.80 | 73.0 | 6.35e-01 | 100.0% | 66.9% |
| 5074238 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.76 | 47.0 | 5.36e-01 | 73.7% | 82.7% |
| 5041607 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.75 | 48.0 | 5.40e-01 | 73.7% | 86.5% |
| 4969578 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 47.0 | 5.32e-01 | 73.7% | 85.1% |
| 4259810 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.74 | 47.0 | 5.17e-01 | 73.7% | 80.0% |
| 5077063 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.74 | 47.0 | 5.31e-01 | 73.7% | 85.3% |
| 4964309 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.73 | 47.0 | 5.31e-01 | 73.7% | 86.5% |
| 5035997 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 46.0 | 5.29e-01 | 73.7% | 88.6% |
| 4987864 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.73 | 46.0 | 5.24e-01 | 71.7% | 85.3% |
| 4991129 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 45.0 | 4.86e-01 | 74.7% | 75.0% |
| 4933363 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.70 | 44.0 | 4.96e-01 | 74.7% | 83.8% |
| None | — | 0.69 | 60.0 | 4.99e-01 | 92.9% | 59.6% | |
| 3996398 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 45.0 | 4.80e-01 | 74.7% | 76.5% |
| 3950458 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.69 | 51.0 | 4.19e-01 | 83.8% | 42.8% |
| 3674829 | 1.1.13.61 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gar1 | 0.69 | 47.0 | 5.49e-01 | 78.8% | 100.0% |
| 4263415 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.69 | 45.0 | 4.70e-01 | 74.7% | 73.3% |
| 4620869 | 1.1.5.57 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 | 0.68 | 60.0 | 4.16e-01 | 100.0% | 52.0% |
| 5048051 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.66 | 48.0 | 5.03e-01 | 74.7% | 86.5% |
| 5000784 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.66 | 45.0 | 4.54e-01 | 74.7% | 69.0% |
| 3199494 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.64 | 56.0 | 4.40e-01 | 99.0% | 63.6% |
| 3232791 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.64 | 48.0 | 4.43e-01 | 94.9% | 61.5% |
| 3695446 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.62 | 53.0 | 4.00e-01 | 94.9% | 50.0% |
| 184471 | 1.1.13.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st | 0.57 | 43.0 | 4.54e-01 | 78.8% | 100.0% |
| 184486 | 1.1.13.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st | 0.56 | 41.0 | 4.51e-01 | 78.8% | 97.5% |
| 185291 | 1.1.13.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 | 0.56 | 41.0 | 4.49e-01 | 78.8% | 100.0% |
| 4930314 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.55 | 41.0 | 4.39e-01 | 79.8% | 96.5% |
| 5081561 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.53 | 38.0 | 4.12e-01 | 76.8% | 98.8% |
| 3645842 | 4.1.1.162 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF502 | 0.53 | 31.0 | 3.33e-01 | 79.8% | 68.8% |
| 3905151 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.51 | 34.0 | 3.14e-01 | 72.7% | 50.8% |
D2
high
residues 125-203
Domain cluster:
rep: p26__NP_613192__Mamestra_configurata_nucleopolyhedrovirus_A__207830__D180-240