Cy104

Euk-Vir

Cynomolgus_cytomegalovirus

Cy104__YP_009337514__Cynomolgus_cytomegalovirus__1919083

Identity

72.5 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Cynomolgus_cytomegalovirus

TaxID: 1919083

View cluster (43 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 166-354

PDB

Domain cluster: rep: E75__YP_007016473__Murid_betaherpesvirus_8__1261657__D167-330

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02489.22 best	Herpes_glycop_H	75.9	3.70e-21	94.2%	36.3%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5w0kA01	3.90.380.20	Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II	0.84	80.0	6.50e-01	100.0%	64.3%
2xqyA01	3.30.500.50	Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 ›	0.74	57.0	5.86e-01	92.1%	83.7%
1nrkA01	3.30.70.1630	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.59	25.0	3.43e-01	70.4%	75.3%
2yxhA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.58	27.0	3.44e-01	81.5%	72.6%
4nkbA01	3.30.1120.120	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain ›	0.54	31.0	3.91e-01	96.8%	93.0%
3rbyA02	2.40.128.310	Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain	0.53	28.0	3.71e-01	87.3%	98.9%
4btfA03	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.52	24.0	3.06e-01	88.4%	71.4%
3i1aA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.52	26.0	3.32e-01	82.5%	83.5%
1nkgA01	2.70.98.10	Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 ›	0.51	40.0	3.60e-01	80.4%	89.6%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2095503	3146.1.1.1 ↗	a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H	0.95	93.0	6.43e-01	100.0%	37.2%
2095478	3146.1.1.1 ↗	a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H	0.85	81.0	5.76e-01	100.0%	41.1%
2701125	3146.1.1.1 ↗	a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H	0.85	81.0	5.77e-01	100.0%	45.1%
1554358	3146.1.1.1 ↗	a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H	0.71	67.0	4.62e-01	100.0%	32.4%
2095476	3146.1.1.1 ↗	a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H	0.70	66.0	4.60e-01	100.0%	33.4%
4014784	9.14.1.1 ↗	beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1	0.64	30.0	4.08e-01	97.4%	85.7%
5019195	12.3.1.0 ↗	beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich	0.55	42.0	3.91e-01	78.8%	83.3%
3351812	601.1.3.11 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › A middle domain of Talin 1 › PF28566	0.55	31.0	3.22e-01	79.4%	56.2%
4122018	4099.1.1.10 ↗	a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1	0.53	28.0	3.65e-01	79.9%	94.0%

D2 medium residues 355-474

PDB

Domain cluster: rep: glycoprotein_UL75__YP_004933840__Cynomolgus_macaque_cytomegalovirus_strain_Ottawa__944969__D362-449

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02489.22 best	Herpes_glycop_H	41.4	1.10e-10	100.0%	25.4%

D3 medium residues 475-586

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02489.22 best	Herpes_glycop_H	42.7	4.50e-11	58.0%	13.8%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2l6lA02	3.10.660.10	Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger	0.54	19.0	2.45e-01	93.8%	49.2%
1l7aA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.51	44.0	3.26e-01	98.2%	51.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3939830	5001.1.1.66 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg	0.53	41.0	3.10e-01	81.2%	85.0%
3933947	5001.1.1.206 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg, 7TM_GPCR_Srv	0.51	45.0	2.97e-01	100.0%	68.4%

D4 medium residues 587-689

PDB

Domain cluster: rep: envelope_glycoprotein_H__YP_004936041__Cercopithecine_betaherpesvirus_5__50292__D611-687

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17488.8 best	Herpes_glycoH_C	90.6	1.00e-25	97.1%	70.9%