←Back to structures

Cy118

Euk-Vir

Cynomolgus_cytomegalovirus

Cy118__YP_009337526__Cynomolgus_cytomegalovirus__1919083

Identity

Accession:: YP_009337526 ↗
Protein ID:: Cy118
Kingdom:: euk

Quality

74.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Cynomolgus_cytomegalovirus

TaxID: 1919083

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 473-550

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	63.0	1.90e-17	98.7%	5.2%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6kjhA01	3.40.710.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily	0.51	40.0	2.71e-01	88.5%	92.3%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
None	—		0.50	37.0	2.52e-01	83.3%	93.2%

D2 medium residues 188-253

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	66.2	2.00e-18	100.0%	4.8%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3buxB01	1.20.930.20	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain	0.66	48.0	3.92e-01	78.8%	89.9%
1b5lA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.59	49.0	3.87e-01	97.0%	81.6%
4hteA03	1.10.167.30	Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 ›	0.57	47.0	4.44e-01	92.4%	85.0%
4hr1A00	1.20.1270.410	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.56	48.0	4.02e-01	98.5%	91.5%
2qqyA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.55	44.0	3.58e-01	93.9%	43.5%
3b0dB00	1.10.20.10	Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A	0.54	44.0	3.98e-01	93.9%	81.1%
2j49A00	1.25.40.500	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain	0.51	42.0	3.36e-01	92.4%	86.6%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5071393	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.61	49.0	3.81e-01	89.4%	46.0%
3903284	5059.1.1.0 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter	0.60	50.0	3.68e-01	92.4%	35.0%
3707358	131.1.1.0 ↗	alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like	0.59	47.0	3.26e-01	86.4%	38.7%
3824761	142.1.1.0 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors	0.56	44.0	4.33e-01	93.9%	81.4%
4983939	5059.1.1.1 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA	0.56	45.0	3.58e-01	90.9%	86.9%
4936739	3921.1.1.1 ↗	alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Rnf-Nqr	0.56	45.0	3.28e-01	90.9%	51.2%
3719895	180.1.1.1 ↗	alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2	0.54	44.0	3.27e-01	95.5%	33.3%
3430186	5059.1.1.3 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT	0.53	43.0	3.14e-01	93.9%	30.8%
4939273	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.53	38.0	3.79e-01	84.8%	71.4%
3925082	5059.1.1.5 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA	0.52	44.0	2.97e-01	95.5%	26.8%
2897149	3921.1.1.1 ↗	alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Rnf-Nqr	0.51	44.0	3.18e-01	100.0%	94.2%

D3 medium residues 254-320_354-382

PDB

D4 medium residues 383-406_437-470_1000-1017_1081-1166_1299-1335

PDB

Domain cluster: rep: major_capsid_protein__NP_050238__Human_betaherpesvirus_6B__32604__D389-450_1004-1021_1081-1128_1145-1167

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	104.3	6.50e-30	45.2%	6.2%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3gwiA00	3.40.1110.10	Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N	0.54	25.0	2.78e-01	78.9%	52.4%
2gu1A02	3.10.450.350	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.53	23.0	3.12e-01	72.4%	76.9%

D5 medium residues 407-436_1018-1080

PDB

D6 medium residues 586-713

PDB

Domain cluster: rep: protein_UL86__YP_004933858__Cynomolgus_macaque_cytomegalovirus_strain_Ottawa__944969__D580-722_767-802

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	139.5	1.50e-40	100.0%	9.2%

D7 medium residues 804-859

PDB

Domain cluster: rep: major_capsid_protein__YP_002608278__Human_herpesvirus_5__10359__D843-891