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Cy40

Euk-Vir

Cynomolgus_cytomegalovirus

Cy40__YP_009337474__Cynomolgus_cytomegalovirus__1919083

Identity

Accession:
YP_009337474 ↗
Protein ID:
Cy40
Kingdom:
euk

Quality

82.1 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Cynomolgus_cytomegalovirus

TaxID: 1919083

Cluster

View cluster (80 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-135
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02393.22 best US22 57.0 3.00e-15 100.0% 77.4%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 50.0 3.38e-01 84.7% 36.7%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 50.0 3.44e-01 84.7% 39.0%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.63 34.0 3.49e-01 74.5% 52.1%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.60 50.0 3.97e-01 89.8% 85.4%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.59 49.0 3.98e-01 88.8% 91.8%
4aezA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 47.0 3.24e-01 84.7% 34.4%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 52.0 3.49e-01 98.0% 77.5%
1mg2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 3.05e-01 85.7% 31.9%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.57 50.0 3.57e-01 100.0% 93.3%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.56 50.0 3.51e-01 100.0% 92.1%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.56 41.0 3.43e-01 100.0% 43.5%
6igbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 47.0 3.28e-01 99.0% 90.1%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.97e-01 85.7% 96.8%
4j0xA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 48.0 3.27e-01 100.0% 90.7%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.54 36.0 3.53e-01 92.9% 62.9%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 47.0 3.37e-01 100.0% 84.5%
1tr8A01 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.53 27.0 3.32e-01 70.4% 84.6%
3rc2A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 35.0 2.85e-01 70.4% 36.3%
4o2wD00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.50 45.0 3.05e-01 100.0% 62.9%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4890944 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 51.0 3.37e-01 84.7% 37.0%
3597973 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 50.0 3.28e-01 84.7% 33.3%
3880462 5.1.4.267 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF28639 0.63 50.0 3.26e-01 84.7% 32.2%
4446397 5.1.4.100 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.63 49.0 3.30e-01 84.7% 39.0%
3519934 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.62 50.0 3.75e-01 84.7% 52.2%
3212280 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 49.0 3.20e-01 84.7% 26.2%
3784764 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.61 48.0 3.28e-01 84.7% 43.7%
3881962 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.60 50.0 4.02e-01 88.8% 88.1%
3709300 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 47.0 2.81e-01 84.7% 15.9%
4025137 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 47.0 3.12e-01 84.7% 33.3%
3371576 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 54.0 3.47e-01 100.0% 78.9%
4002544 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.59 46.0 2.90e-01 84.7% 46.1%
3657704 5.1.5.54 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NOL10_N 0.58 46.0 4.09e-01 84.7% 95.0%
3524157 5.1.4.628 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WDR90_beta-prop_4th 0.58 45.0 3.12e-01 84.7% 38.9%
3940911 5.1.4.179 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 0.58 50.0 3.34e-01 94.9% 89.6%
3461500 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.58 45.0 3.17e-01 85.7% 39.6%
3742050 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 52.0 3.53e-01 100.0% 94.6%
3941131 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.57 52.0 3.53e-01 100.0% 90.0%
3923605 5.1.5.162 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_ACSF4 0.57 44.0 3.04e-01 84.7% 38.6%
3789860 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 3.50e-01 99.0% 95.4%
3822364 3270.1.1.1 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.57 41.0 4.38e-01 75.5% 97.6%
3391303 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 49.0 3.33e-01 95.9% 96.4%
3672558 5.1.4.222 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_prop_At2g24240 0.56 51.0 3.42e-01 100.0% 92.5%
3718492 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 43.0 3.30e-01 84.7% 43.6%
3223991 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 50.0 3.51e-01 100.0% 67.5%
3487868 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.55 36.0 4.16e-01 88.8% 100.0%
3926057 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.55 49.0 3.40e-01 100.0% 82.4%
2418904 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.55 47.0 3.28e-01 99.0% 90.1%
3444449 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 3.22e-01 94.9% 86.5%
3597662 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 48.0 3.20e-01 100.0% 80.0%
3575745 5.1.4.90 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 0.53 47.0 3.28e-01 100.0% 90.4%
4016471 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 38.0 2.94e-01 76.5% 88.5%
3704984 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 3.13e-01 100.0% 90.6%
3407569 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 46.0 3.27e-01 99.0% 91.6%
D2 high residues 148-277
PDB
Domain cluster: rep: rh40__YP_068134__Macacine_betaherpesvirus_3__47929__D148-277