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Cy43

Euk-Vir

Cynomolgus_cytomegalovirus

Cy43__YP_009337476__Cynomolgus_cytomegalovirus__1919083

Identity

Accession:
YP_009337476 ↗
Protein ID:
Cy43
Kingdom:
euk

Quality

71.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Cynomolgus_cytomegalovirus

TaxID: 1919083

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 254-398
PDB
Domain cluster: rep: tegument_protein_UL25__YP_004940051__Aotine_betaherpesvirus_1__50290__D247-382
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04637.17 best Herpes_pp85 25.8 4.70e-06 82.8% 17.5%
D2 high residues 472-579
PDB
Domain cluster: rep: tegument_protein_UL25__YP_004936002__Cercopithecine_betaherpesvirus_5__50292__D469-546
D3 medium residues 170-253
PDB
Domain cluster: rep: tegument_protein_UL25__YP_004940051__Aotine_betaherpesvirus_1__50290__D159-246
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04637.17 best Herpes_pp85 29.7 3.10e-07 100.0% 15.3%
D4 medium residues 399-471
PDB
Domain cluster: rep: tegument_protein_UL25__YP_004940051__Aotine_betaherpesvirus_1__50290__D389-454
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k04A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.79 70.0 6.28e-01 100.0% 95.2%
1q0gA00 1.20.120.400 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase 0.78 71.0 6.01e-01 100.0% 71.8%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.76 65.0 6.24e-01 95.9% 88.1%
2ot4A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.75 66.0 5.85e-01 100.0% 86.9%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.73 64.0 5.44e-01 98.6% 66.4%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.70 49.0 4.73e-01 74.0% 97.6%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.70 60.0 5.91e-01 100.0% 98.8%
2oo2A00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.68 58.0 5.75e-01 98.6% 97.4%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.67 47.0 4.74e-01 74.0% 97.3%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.66 53.0 4.99e-01 91.8% 78.7%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.65 43.0 4.89e-01 75.3% 94.2%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.65 43.0 4.48e-01 76.7% 73.5%
1xjaB00 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.65 55.0 4.36e-01 95.9% 100.0%
1jalA03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.61 52.0 5.05e-01 95.9% 91.4%
4cc9B00 1.20.5.4730 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 51.0 4.71e-01 98.6% 72.4%
6qumQ00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.58 40.0 4.01e-01 71.2% 75.7%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.58 49.0 4.93e-01 94.5% 100.0%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.56 50.0 4.93e-01 98.6% 98.7%
3h3mA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.54 46.0 4.39e-01 95.9% 95.5%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4426305 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.85 74.0 7.16e-01 94.5% 95.0%
3822258 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.84 75.0 5.92e-01 95.9% 62.1%
3827313 633.4.1.0 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.83 75.0 6.44e-01 97.3% 79.1%
5036461 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.82 67.0 6.24e-01 89.0% 90.0%
4492498 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.81 71.0 6.95e-01 97.3% 96.2%
4969435 633.5.1.1 ↗ alpha bundles › Bromodomain-like › LemA-like › LemA-like › LemA 0.81 73.0 5.53e-01 100.0% 48.8%
4927172 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.79 70.0 6.37e-01 100.0% 82.0%
5067835 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.79 66.0 6.72e-01 91.8% 100.0%
3766742 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.77 69.0 5.93e-01 100.0% 98.3%
4946174 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 61.0 5.76e-01 87.7% 72.2%
5070668 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.76 67.0 6.69e-01 100.0% 96.0%
5031855 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.76 64.0 6.30e-01 97.3% 100.0%
4015874 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.75 61.0 4.66e-01 90.4% 70.3%
5016654 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.75 60.0 6.29e-01 89.0% 100.0%
4949658 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.75 64.0 6.28e-01 97.3% 100.0%
4025391 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.74 66.0 6.29e-01 100.0% 96.5%
4981750 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.74 63.0 6.13e-01 95.9% 87.5%
5059490 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 61.0 4.39e-01 90.4% 33.2%
5060146 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.74 59.0 6.22e-01 89.0% 100.0%
5061375 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.73 62.0 6.35e-01 95.9% 100.0%
3269107 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.73 60.0 4.37e-01 91.8% 71.2%
5060253 632.23.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.72 58.0 6.08e-01 89.0% 100.0%
3205548 632.7.1.51 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › Etd1 0.72 59.0 6.08e-01 91.8% 100.0%
4954045 632.19.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.72 58.0 5.99e-01 90.4% 100.0%
5060845 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.72 57.0 5.97e-01 89.0% 100.0%
5068969 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.72 59.0 6.01e-01 93.2% 94.3%
3736699 605.4.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF202 0.71 60.0 5.15e-01 98.6% 79.2%
3740860 3755.3.1.362 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PRM1 0.70 62.0 4.26e-01 100.0% 72.0%
3959306 150.8.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.69 52.0 4.21e-01 82.2% 100.0%
3378749 5057.1.1.0 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.66 51.0 4.50e-01 82.2% 65.7%
3344575 9.26.1.0 ↗ beta barrels › Lipocalins/Streptavidin 0.66 47.0 3.45e-01 75.3% 34.9%
3198546 4120.1.1.63 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › PF30356 0.60 44.0 3.62e-01 80.8% 42.2%
4157096 5058.1.1.16 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.59 43.0 4.02e-01 76.7% 70.0%
4999686 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.59 51.0 5.08e-01 94.5% 100.0%
3267859 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.56 51.0 4.74e-01 100.0% 83.3%
4933335 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.54 46.0 4.51e-01 94.5% 92.5%