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Cy50.1

Euk-Vir

Cynomolgus_cytomegalovirus

Cy50.1__YP_009337480__Cynomolgus_cytomegalovirus__1919083

Identity

Accession:
YP_009337480 ↗
Protein ID:
Cy50.1
Kingdom:
euk

Quality

74.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-79
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c9bB00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.74 65.0 4.43e-01 100.0% 27.8%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.73 64.0 5.32e-01 100.0% 68.3%
2a2fX02 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.73 65.0 5.45e-01 100.0% 76.0%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.70 49.0 4.31e-01 72.4% 90.8%
4jxtA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.70 58.0 4.96e-01 100.0% 55.4%
2w0gA00 1.20.58.610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain 0.69 60.0 5.02e-01 100.0% 57.4%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.68 49.0 5.28e-01 80.3% 93.7%
3n2oA03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 54.0 5.01e-01 88.2% 68.8%
2j1dG01 1.20.58.2220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain 0.67 53.0 3.42e-01 86.8% 59.5%
3bwtA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.67 53.0 3.47e-01 100.0% 19.8%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.67 48.0 4.21e-01 75.0% 91.9%
1werA02 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.66 55.0 4.48e-01 100.0% 48.0%
3gs3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.66 59.0 4.10e-01 100.0% 34.1%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.65 47.0 4.16e-01 75.0% 93.6%
3ajfA00 1.20.1440.190 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tenuivirus movement protein 0.65 46.0 4.37e-01 98.7% 62.0%
4ks9A01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.64 57.0 4.86e-01 100.0% 78.6%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.64 51.0 4.95e-01 88.2% 78.8%
1mqsA04 1.25.40.60 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 47.0 4.39e-01 100.0% 61.2%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 52.0 4.76e-01 90.8% 87.3%
1ldjA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.62 51.0 4.37e-01 90.8% 88.8%
2r5sA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 49.0 4.70e-01 100.0% 75.0%
3rrcB01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.62 55.0 4.34e-01 100.0% 68.4%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.62 54.0 4.76e-01 100.0% 84.1%
2wauA01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.61 54.0 4.30e-01 100.0% 66.5%
2juaA00 1.20.1480.30 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Designed four-helix bundle protein 0.61 48.0 4.42e-01 86.8% 85.3%
2mw2A00 1.20.1280.40 Mainly Alpha › Up-down Bundle › Monooxygenase › HHA 0.61 49.0 5.15e-01 93.4% 100.0%
7nc3F01 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 47.0 4.18e-01 86.8% 73.7%
3u5nA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.59 43.0 3.79e-01 77.6% 71.7%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.59 42.0 4.45e-01 76.3% 90.8%
5jcpB01 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.59 52.0 3.87e-01 98.7% 93.8%
2ynqB00 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.59 45.0 3.63e-01 100.0% 41.7%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.59 51.0 4.57e-01 98.7% 83.6%
2mbgA01 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.59 52.0 3.90e-01 100.0% 47.7%
4uyeA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.59 42.0 3.77e-01 76.3% 81.7%
4a15A03 1.10.275.40 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › 0.58 51.0 4.22e-01 100.0% 66.4%
1m12A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.57 42.0 4.07e-01 80.3% 70.2%
1xo0A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.57 48.0 4.34e-01 98.7% 70.3%
2osaA00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.57 47.0 3.60e-01 96.1% 71.9%
4eadA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.57 48.0 4.38e-01 98.7% 75.7%
4at7B01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.56 39.0 3.30e-01 72.4% 66.9%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.56 43.0 3.97e-01 84.2% 82.4%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.56 49.0 3.70e-01 100.0% 85.8%
2oifB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 47.0 3.93e-01 100.0% 70.2%
2ovjA00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.56 49.0 3.65e-01 100.0% 95.5%
5n13A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.56 40.0 3.67e-01 78.9% 77.8%
5y6qB02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.55 39.0 3.54e-01 75.0% 61.3%
3ecsC01 1.20.120.1070 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain 0.55 46.0 4.32e-01 100.0% 76.0%
5my3A00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.54 47.0 3.50e-01 98.7% 93.7%
6vvoC03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.54 47.0 4.50e-01 100.0% 84.6%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 42.0 4.16e-01 88.2% 80.8%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.54 39.0 3.67e-01 78.9% 63.3%
3h9pA00 1.10.4200.10 Mainly Alpha › Orthogonal Bundle › Triphosphoribosyl-dephospho-CoA protein › Triphosphoribosyl-dephospho-CoA protein 0.53 43.0 3.28e-01 100.0% 37.6%
3wd6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 45.0 3.96e-01 100.0% 83.9%
2yqdA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 43.0 3.71e-01 90.8% 79.2%
1w07A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.52 45.0 3.96e-01 100.0% 78.4%
2v40A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.51 38.0 3.64e-01 77.6% 87.5%
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.51 37.0 3.58e-01 81.6% 67.0%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3996116 109.4.1.1968 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_KNTC1_2nd 0.82 75.0 4.66e-01 100.0% 20.8%
3848558 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.81 74.0 6.35e-01 100.0% 65.2%
3269269 109.4.1.31 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3 0.78 71.0 4.94e-01 100.0% 32.8%
3628934 109.4.1.1432 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Thoc2, THOC2_N 0.77 67.0 3.92e-01 100.0% 11.5%
3595167 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.77 63.0 4.53e-01 100.0% 31.6%
3392844 109.4.1.933 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Trm732 0.76 69.0 4.26e-01 100.0% 22.2%
3489036 109.4.1.224 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_CAF1_bind 0.76 68.0 4.85e-01 100.0% 35.9%
3611589 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 66.0 4.38e-01 100.0% 36.1%
3583980 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 65.0 5.88e-01 100.0% 81.9%
3714519 109.4.1.18 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.73 66.0 3.99e-01 100.0% 18.1%
3923736 551.1.1.1 alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › CDC37_M 0.73 58.0 4.74e-01 100.0% 47.1%
3407284 109.4.1.31 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3 0.73 65.0 4.57e-01 100.0% 50.4%
3922156 5067.1.1.3 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched 0.72 56.0 4.39e-01 82.9% 55.5%
3290503 4198.1.1.0 alpha arrays › TerB-like › TerB-like › TerB-like 0.70 60.0 5.11e-01 94.7% 96.0%
3579055 109.4.1.140 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NatB_MDM20 0.70 59.0 4.70e-01 96.1% 48.1%
3974488 532.2.1.0 alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.69 57.0 5.54e-01 100.0% 82.4%
3999880 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.69 59.0 4.34e-01 100.0% 34.9%
3532074 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.68 56.0 4.35e-01 92.1% 41.7%
3214973 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 59.0 3.71e-01 100.0% 19.2%
3271980 331.18.1.9 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › RasGEF 0.68 59.0 4.40e-01 97.4% 52.8%
3610734 109.4.1.22 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.67 52.0 3.50e-01 100.0% 21.6%
3630440 109.4.1.1328 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26034 0.66 58.0 5.06e-01 97.4% 74.8%
3842805 109.4.1.442 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › THOC2_N 0.66 57.0 4.83e-01 98.7% 62.3%
3799115 109.4.1.828 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Htt_C-HEAT 0.65 56.0 3.42e-01 98.7% 32.8%
4164636 185.1.1.5 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Gliadin 0.64 58.0 5.07e-01 100.0% 90.4%
3401641 109.4.1.172 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS19_C 0.63 54.0 3.23e-01 100.0% 12.2%
3743212 109.4.1.330 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BIG2_C 0.63 53.0 3.96e-01 100.0% 47.3%
4109209 592.1.1.13 alpha arrays › PWI domain-like › PWI domain › PWI domain › DUF4603 0.63 45.0 4.17e-01 76.3% 64.6%
3169906 109.4.1.1391 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec10_HB, Sec10_N 0.62 53.0 3.14e-01 98.7% 12.1%
3277060 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.62 44.0 4.44e-01 73.7% 78.7%
3403345 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 57.0 4.23e-01 100.0% 45.4%
5023652 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 55.0 4.16e-01 100.0% 43.2%
3919069 176.1.1.2 alpha arrays › Annexin › Annexin › Annexin › Annexin_2 0.62 52.0 4.70e-01 100.0% 68.6%
3561044 176.1.1.2 alpha arrays › Annexin › Annexin › Annexin › Annexin_2 0.61 50.0 4.81e-01 100.0% 78.9%
3255703 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.61 52.0 4.73e-01 100.0% 86.2%
3471670 611.3.1.1 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.60 51.0 5.13e-01 100.0% 94.7%
3740780 604.12.1.2 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.60 48.0 4.90e-01 90.8% 89.3%
3730863 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.60 52.0 4.13e-01 98.7% 88.1%
5068948 109.4.1.3068 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2225 0.60 54.0 4.42e-01 100.0% 59.3%
3932954 3198.1.1.1 alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA 0.59 52.0 4.52e-01 100.0% 94.2%
3742744 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 47.0 4.08e-01 89.5% 75.2%
3594310 604.12.1.2 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.59 48.0 4.72e-01 90.8% 83.7%
3269765 189.1.1.2 alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.59 51.0 3.82e-01 100.0% 90.5%
None 0.59 51.0 4.01e-01 100.0% 62.9%
3739502 189.1.1.2 alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.59 50.0 3.76e-01 96.1% 55.7%
3493391 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 46.0 4.17e-01 89.5% 74.5%
3576882 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 44.0 3.89e-01 84.2% 70.0%
3696460 633.4.1.0 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.58 49.0 3.93e-01 98.7% 84.7%
3706800 129.1.1.0 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.57 42.0 3.66e-01 92.1% 50.8%
3381981 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.56 49.0 3.47e-01 100.0% 58.0%
3538729 189.1.1.2 alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.56 47.0 3.55e-01 97.4% 67.8%
3719996 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 3.82e-01 97.4% 65.7%
3785340 7581.1.1.3 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt,Ketoacyl-synt_C 0.52 43.0 2.56e-01 100.0% 72.6%
3612815 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.51 41.0 3.61e-01 97.4% 57.5%
3699757 632.18.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.51 35.0 3.68e-01 96.1% 78.6%