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Cy91

Euk-Vir

Cynomolgus_cytomegalovirus

Cy91__YP_009337506__Cynomolgus_cytomegalovirus__1919083

Identity

Accession:: YP_009337506 ↗
Protein ID:: Cy91
Kingdom:: euk

Quality

74.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Cynomolgus_cytomegalovirus

TaxID: 1919083

Cluster

View cluster (77 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-130

PDB

Domain cluster: rep: transport_protein__YP_004207847__Cricetid_gammaherpesvirus_2__1605972__D1-97

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	147.5	5.80e-43	97.7%	19.4%

CATH (26)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2iakA01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.77	60.0	5.17e-01	80.8%	86.5%
3r6nB01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.72	53.0	4.37e-01	75.4%	48.2%
2b0hA01	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.68	53.0	5.41e-01	83.1%	83.6%
1nzeA00	1.20.120.290	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle	0.68	48.0	5.08e-01	79.2%	83.0%
1i6zA00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.68	49.0	4.88e-01	74.6%	83.0%
3ls1A00	1.20.120.290	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle	0.67	48.0	4.84e-01	82.3%	73.7%
3axjB01	1.20.58.190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1	0.66	47.0	4.46e-01	77.7%	61.9%
4w8pA02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.65	50.0	5.04e-01	83.1%	80.8%
6xz3A01	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.65	48.0	5.05e-01	77.7%	86.3%
1jgcA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.65	49.0	4.57e-01	79.2%	94.4%
1dowA00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.64	50.0	4.33e-01	83.8%	79.0%
2qr4A01	1.20.140.70	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain	0.63	53.0	5.01e-01	90.0%	93.6%
3unoE00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.63	48.0	4.47e-01	81.5%	94.0%
1s3qG00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.61	48.0	4.46e-01	83.8%	98.2%
1aepA00	1.20.120.20	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein	0.61	42.0	3.96e-01	74.6%	58.8%
2xq9A02	1.20.58.390	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain	0.61	49.0	5.10e-01	86.2%	93.4%
3i9wA00	1.20.58.920	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.61	49.0	3.90e-01	86.9%	92.2%
1xwjA01	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.58	43.0	4.32e-01	77.7%	80.8%
3u3iA02	1.20.58.1110	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	40.0	4.37e-01	70.8%	85.2%
2v5cA03	1.20.58.460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like	0.57	43.0	4.38e-01	81.5%	82.3%
3ns4A00	1.10.357.110	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Vacuolar protein sorting-associated protein 53, C-terminus	0.56	44.0	3.85e-01	83.8%	62.0%
4djhA01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.56	46.0	3.55e-01	87.7%	57.5%
5wp3B00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.54	38.0	4.19e-01	71.5%	97.1%
3ihuA02	1.20.120.530	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like	0.52	41.0	4.09e-01	83.8%	88.5%
2np5D00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.50	38.0	3.64e-01	80.0%	79.1%
3f0cA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.50	38.0	3.74e-01	80.0%	89.6%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3801688	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.78	55.0	6.06e-01	71.5%	98.1%
5038958	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.69	58.0	4.92e-01	90.0%	92.2%
4986068	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.68	56.0	4.82e-01	86.9%	93.0%
4982260	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.68	56.0	4.92e-01	88.5%	95.4%
3208120	633.23.1.22 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL	0.67	48.0	4.58e-01	74.6%	78.7%
3979628	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.67	50.0	4.70e-01	77.7%	81.3%
4327891	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.64	52.0	4.49e-01	86.9%	90.2%
3862625	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.64	48.0	4.73e-01	80.8%	72.9%
3573621	5059.1.1.8 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Mg_trans_NIPA	0.63	45.0	4.21e-01	73.1%	65.0%
4023478	633.10.1.0 ↗	alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like	0.63	48.0	4.26e-01	80.8%	68.4%
3227805	5001.1.1.63 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srab	0.62	53.0	4.04e-01	93.1%	57.7%
4002094	1075.5.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter	0.62	49.0	3.91e-01	84.6%	43.1%
3679786	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.61	44.0	4.47e-01	73.1%	88.8%
3972329	633.5.1.0 ↗	alpha bundles › Bromodomain-like › LemA-like › LemA-like	0.61	41.0	3.78e-01	73.8%	52.7%
3407323	192.29.1.7 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TMEM192	0.60	46.0	4.41e-01	80.0%	88.0%
4011664	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.58	45.0	3.87e-01	82.3%	85.2%
4234516	1075.4.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane	0.55	39.0	2.91e-01	73.8%	88.4%
4369223	1075.4.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane	0.53	48.0	3.62e-01	98.5%	68.1%
3469701	3755.1.1.0 ↗	alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related	0.53	41.0	3.44e-01	82.3%	91.7%
3176538	4177.1.1.5 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5	0.53	37.0	3.02e-01	71.5%	87.2%
3290286	150.8.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE	0.52	38.0	3.45e-01	76.2%	91.9%

D2 medium residues 131-183_218-227_498-527

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_2__YP_007969816__Elephantid_betaherpesvirus_1__146015__D118-183_479-495

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	68.1	6.60e-19	69.9%	9.4%

D3 medium residues 362-403_474-497

PDB

D4 medium residues 528-711

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_2__YP_081515__Human_betaherpesvirus_5__10359__D575-765

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	161.5	3.50e-47	62.5%	16.9%