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Cytochrome_P450

Euk-Vir

Pandoravirus_salinus

Cytochrome_P450__YP_008437357__Pandoravirus_salinus__1349410

Identity

Accession:
YP_008437357 ↗
Protein ID:
Cytochrome_P450
Kingdom:
euk

Quality

73.7 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_salinus

TaxID: 1349410

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 179-264_282-299
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dvqL00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.77 70.0 4.53e-01 100.0% 26.7%
2wyhB04 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.60 42.0 4.26e-01 71.2% 78.2%
1wdhA02 1.10.720.60 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.60 38.0 3.86e-01 85.6% 63.7%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.56 38.0 3.98e-01 71.2% 77.3%
3m9vA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 43.0 3.79e-01 85.6% 72.6%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 42.0 4.20e-01 85.6% 99.1%
3kh1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 49.0 3.99e-01 100.0% 76.9%
2g80A02 1.10.720.60 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.54 29.0 3.33e-01 92.3% 70.5%
2oexA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.53 37.0 3.38e-01 72.1% 80.4%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.53 38.0 3.08e-01 75.0% 80.0%
3pxpA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 29.0 3.02e-01 90.4% 55.9%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.52 40.0 4.23e-01 93.3% 93.4%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 39.0 3.97e-01 79.8% 90.4%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 43.0 3.81e-01 92.3% 90.9%
5b00A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.50 39.0 3.04e-01 86.5% 64.4%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1678383 3981.1.1.1 ↗ alpha bundles › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › Mitochondrial distribution and morphology protein 35 › UPF0203 0.72 48.0 5.47e-01 94.2% 93.3%
5012794 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.59 52.0 3.64e-01 99.0% 80.6%
3839810 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.58 40.0 3.60e-01 70.2% 68.6%
3648687 604.12.1.89 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › CDP-OH_P_transf 0.57 40.0 4.21e-01 84.6% 80.0%
3398473 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.57 40.0 3.92e-01 72.1% 70.0%
3735658 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.57 36.0 3.50e-01 100.0% 58.3%
3693286 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.56 46.0 3.78e-01 89.4% 52.8%
3465231 192.15.1.189 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Frigida 0.56 36.0 4.07e-01 83.7% 83.7%
3563090 3476.1.1.0 ↗ alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain 0.55 35.0 3.98e-01 84.6% 85.0%
4975050 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.54 33.0 3.77e-01 78.8% 82.7%
3209446 632.22.1.131 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › SOG2 0.54 42.0 3.95e-01 85.6% 81.5%
3309329 601.14.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin 0.54 41.0 3.36e-01 84.6% 71.8%
3989866 2002.1.1.226 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF4838 0.53 44.0 2.93e-01 94.2% 34.6%
5050223 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 45.0 3.48e-01 94.2% 63.2%
3408094 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.53 40.0 3.65e-01 79.8% 80.0%
3460130 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.52 37.0 4.13e-01 83.7% 95.0%
3757869 4006.1.1.0 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain 0.52 36.0 3.77e-01 72.1% 84.2%
4942736 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 40.0 4.04e-01 83.7% 87.6%
3180530 3711.1.1.0 ↗ alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.50 36.0 3.60e-01 76.0% 77.3%
3523903 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 32.0 3.62e-01 87.5% 85.0%
D2 medium residues 300-369
PDB
Domain cluster: rep: Cytochrome_P450__YP_009480832__Pandoravirus_macleodensis__2107707__D324-385
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00067.28 best p450 42.8 4.40e-11 100.0% 14.9%