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D205R

Euk-Vir

African_swine_fever_virus

D205R__YP_009703164__African_swine_fever_virus__10497

Identity

Accession:
YP_009703164 ↗
Protein ID:
D205R
Kingdom:
euk

Quality

72.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Asfuvirales› Asfarviridae› Asfivirus› African_swine_fever_virus

TaxID: 10497

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-126
PDB
D2 high residues 130-201
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_II_subunit_RPB5__YP_008052525__Phaeocystis_globosa_virus__251749__D146-209
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01191.25 best RNA_pol_Rpb5_C 72.1 3.40e-20 98.6% 97.3%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dzfA02 3.90.940.20 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.88 83.0 8.30e-01 100.0% 98.6%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.68 33.0 3.63e-01 93.1% 56.9%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.63 34.0 2.52e-01 93.1% 20.8%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.59 37.0 4.34e-01 93.1% 92.0%
3q48A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.90e-01 93.1% 68.7%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.54 33.0 3.42e-01 100.0% 65.2%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 35.0 3.34e-01 100.0% 57.0%
1o75A04 2.60.40.1270 Mainly Beta › Sandwich › Immunoglobulin-like › Penicillin-binding protein Tp47, domain D 0.53 38.0 3.70e-01 93.1% 67.1%
4it4E01 2.40.30.320 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 46.0 4.01e-01 100.0% 91.2%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 40.0 3.57e-01 93.1% 57.3%
5oj2B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.30e-01 94.4% 57.0%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.52 39.0 2.55e-01 84.7% 78.8%
2g8yA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.51 39.0 2.88e-01 86.1% 95.0%
1u4dA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 30.0 2.92e-01 94.4% 48.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4861748 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.97 87.0 8.82e-01 93.1% 94.4%
4253107 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.97 92.0 9.14e-01 100.0% 97.3%
4838977 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.96 92.0 9.02e-01 100.0% 94.7%
4600910 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.95 84.0 8.58e-01 93.1% 97.1%
3824571 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.94 90.0 8.90e-01 100.0% 96.0%
3607644 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.93 88.0 8.72e-01 100.0% 97.3%
3596039 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.93 85.0 8.63e-01 97.2% 100.0%
3033324 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.83 75.0 7.53e-01 100.0% 100.0%
4832853 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 36.0 3.57e-01 93.1% 48.0%
5078728 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 52.0 4.25e-01 93.1% 67.7%
4021561 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.60 43.0 3.76e-01 94.4% 51.4%
4973372 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 51.0 4.19e-01 93.1% 70.4%
5003023 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.59 50.0 4.18e-01 91.7% 70.0%
4932944 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 51.0 4.23e-01 94.4% 72.8%
5074621 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.58 50.0 4.17e-01 93.1% 67.5%
4984563 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.57 49.0 4.04e-01 93.1% 69.6%
3244285 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.55 41.0 4.12e-01 93.1% 76.0%
5026843 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.54 47.0 3.82e-01 95.8% 57.8%
3638648 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 39.0 3.29e-01 98.6% 44.8%
3583716 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.53 38.0 3.47e-01 93.1% 57.9%
3566232 11.1.1.898 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_NUP210_16th 0.52 34.0 3.02e-01 94.4% 45.7%
3706849 11.1.1.173 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CHB_HEX_C_1 0.52 36.0 3.49e-01 94.4% 65.0%
4185196 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 33.0 3.32e-01 94.4% 62.7%
4377781 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 38.0 3.72e-01 100.0% 72.5%