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D5_family_NTPase_ATPase
Euk-VirShrimp_hemocyte_iridescent_virus
D5_family_NTPase_ATPase__YP_010084866__Shrimp_hemocyte_iridescent_virus__2039780
Identity
- Accession:
- YP_010084866 ↗
- Protein ID:
- D5_family_NTPase_ATPase
- Kingdom:
- euk
Quality
76.9
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Iridoviridae›
Decapodiridovirus›
Shrimp_hemocyte_iridescent_virus
TaxID: 2039780
Cluster
View cluster (27 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 809-878
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dp7P00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 64.0 | 6.27e-01 | 95.7% | 97.4% |
| 4i5jA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.71 | 56.0 | 4.32e-01 | 85.7% | 75.8% |
| 2ph7A01 | 1.10.3400.10 | Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like | 0.71 | 62.0 | 5.14e-01 | 98.6% | 72.6% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 63.0 | 5.52e-01 | 100.0% | 78.6% |
| 3x1oA00 | 1.20.120.1790 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.69 | 58.0 | 4.62e-01 | 97.1% | 49.0% |
| 3cuqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 57.0 | 5.46e-01 | 95.7% | 96.3% |
| 4ii2A02 | 3.40.50.12550 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 2 | 0.67 | 53.0 | 3.81e-01 | 88.6% | 73.7% |
| 2ysrA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 56.0 | 4.97e-01 | 97.1% | 91.4% |
| 5hvqC01 | 3.90.1150.220 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.66 | 56.0 | 5.42e-01 | 95.7% | 95.0% |
| 2xubA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 54.0 | 4.98e-01 | 97.1% | 81.5% |
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.62 | 45.0 | 4.79e-01 | 77.1% | 88.7% |
| 1eg3A03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.60 | 48.0 | 4.55e-01 | 95.7% | 89.0% |
| 1pp0B00 | 3.40.198.10 | Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like | 0.58 | 49.0 | 3.64e-01 | 98.6% | 90.7% |
| 3nkyA03 | 1.20.960.20 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.58 | 39.0 | 3.86e-01 | 87.1% | 67.1% |
| 5ce6A02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.57 | 48.0 | 3.32e-01 | 97.1% | 43.9% |
| 3dvoA00 | 3.40.91.10 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.57 | 48.0 | 3.16e-01 | 98.6% | 57.5% |
| 2r2iA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 45.0 | 4.21e-01 | 87.1% | 74.7% |
| 4mfzA02 | 3.40.630.120 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.56 | 42.0 | 3.37e-01 | 82.9% | 57.8% |
| 2k2aA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 42.0 | 4.22e-01 | 85.7% | 82.9% |
| 2m7aA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 45.0 | 4.32e-01 | 95.7% | 87.2% |
| 2be4A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 44.0 | 4.28e-01 | 98.6% | 95.1% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.50 | 39.0 | 2.90e-01 | 91.4% | 52.4% |
ECOD (70)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4973290 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.86 | 77.0 | 7.72e-01 | 95.7% | 100.0% |
| 3954610 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.85 | 77.0 | 7.58e-01 | 98.6% | 97.3% |
| 5081315 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.83 | 72.0 | 7.08e-01 | 94.3% | 98.7% |
| 3498779 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.81 | 72.0 | 6.77e-01 | 98.6% | 97.6% |
| 5003621 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.81 | 72.0 | 6.50e-01 | 97.1% | 80.0% |
| 5029778 | 101.1.2.43 ↗ | alpha arrays › HTH › HTH › winged helix domain › Pox_D5 | 0.81 | 73.0 | 6.67e-01 | 98.6% | 88.9% |
| 3480455 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.81 | 71.0 | 6.85e-01 | 98.6% | 100.0% |
| 5022021 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.80 | 72.0 | 6.01e-01 | 98.6% | 70.4% |
| 3537242 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.78 | 68.0 | 6.07e-01 | 98.6% | 80.0% |
| 3177239 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.78 | 69.0 | 5.55e-01 | 100.0% | 89.6% |
| 3883278 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.77 | 68.0 | 6.14e-01 | 98.6% | 83.2% |
| 3993626 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.77 | 67.0 | 6.35e-01 | 98.6% | 91.8% |
| 3898745 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.76 | 67.0 | 6.11e-01 | 100.0% | 88.4% |
| 3743842 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 67.0 | 5.98e-01 | 100.0% | 87.0% |
| 3413423 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.75 | 64.0 | 6.28e-01 | 94.3% | 96.0% |
| 4991793 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 65.0 | 4.52e-01 | 97.1% | 30.7% |
| 4029192 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.73 | 64.0 | 4.01e-01 | 97.1% | 24.3% |
| 5071694 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 63.0 | 5.44e-01 | 95.7% | 67.3% |
| 3581108 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 64.0 | 5.33e-01 | 97.1% | 69.2% |
| 3689786 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 64.0 | 4.83e-01 | 100.0% | 47.1% |
| 3857980 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.72 | 62.0 | 5.41e-01 | 97.1% | 83.5% |
| 3696367 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 54.0 | 5.33e-01 | 82.9% | 78.7% |
| 4972260 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 62.0 | 5.64e-01 | 98.6% | 85.3% |
| 4159466 | 4020.1.1.0 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes | 0.71 | 60.0 | 4.84e-01 | 100.0% | 48.9% |
| 3608085 | 101.1.2.127 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 | 0.71 | 61.0 | 5.55e-01 | 95.7% | 74.5% |
| 3449832 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.71 | 60.0 | 4.12e-01 | 94.3% | 89.2% |
| 4933807 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 60.0 | 5.67e-01 | 95.7% | 91.8% |
| 5071551 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 60.0 | 5.51e-01 | 97.1% | 82.1% |
| 3266319 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.70 | 53.0 | 4.60e-01 | 80.0% | 59.0% |
| 5051570 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 60.0 | 5.18e-01 | 98.6% | 81.7% |
| 4967393 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 58.0 | 5.90e-01 | 94.3% | 95.7% |
| 4182618 | 101.1.2.616 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27833 | 0.70 | 58.0 | 5.14e-01 | 94.3% | 71.4% |
| 3579831 | 101.1.2.188 ↗ | alpha arrays › HTH › HTH › winged helix domain › Roquin_1_2-like_ROQ | 0.69 | 59.0 | 5.02e-01 | 97.1% | 62.5% |
| 4980135 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 60.0 | 5.20e-01 | 97.1% | 65.7% |
| 3168448 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.69 | 59.0 | 4.84e-01 | 95.7% | 58.1% |
| 308453 | 108.1.1.98 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 | 0.69 | 51.0 | 4.56e-01 | 80.0% | 67.0% |
| 3997569 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 59.0 | 5.95e-01 | 95.7% | 97.1% |
| 3962321 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 59.0 | 5.31e-01 | 98.6% | 83.0% |
| 3550851 | 101.1.2.86 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 | 0.68 | 58.0 | 5.51e-01 | 95.7% | 91.8% |
| 5035389 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 59.0 | 5.57e-01 | 97.1% | 81.2% |
| 5062064 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 58.0 | 5.67e-01 | 97.1% | 94.9% |
| 3954639 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 58.0 | 5.47e-01 | 95.7% | 90.6% |
| 3816427 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.68 | 60.0 | 5.21e-01 | 97.1% | 70.5% |
| 3271592 | 101.1.2.186 ↗ | alpha arrays › HTH › HTH › winged helix domain › ASH2L-like_WH | 0.67 | 56.0 | 5.12e-01 | 94.3% | 86.3% |
| 3596843 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.67 | 51.0 | 4.59e-01 | 81.4% | 84.2% |
| 3582810 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 56.0 | 5.20e-01 | 97.1% | 74.4% |
| 1154435 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.66 | 52.0 | 5.23e-01 | 85.7% | 93.0% |
| 3881263 | 108.1.1.98 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 | 0.65 | 56.0 | 5.11e-01 | 97.1% | 86.3% |
| 3179239 | 101.1.2.4 ↗ | alpha arrays › HTH › HTH › winged helix domain › Forkhead | 0.65 | 55.0 | 5.25e-01 | 97.1% | 84.7% |
| 4169937 | 108.1.1.99 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 | 0.65 | 56.0 | 5.07e-01 | 97.1% | 86.3% |
| 3464462 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 54.0 | 3.99e-01 | 97.1% | 84.1% |
| 3684722 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.65 | 54.0 | 4.92e-01 | 97.1% | 92.0% |
| 4008765 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 53.0 | 4.71e-01 | 95.7% | 81.7% |
| 4927328 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 55.0 | 5.01e-01 | 98.6% | 81.1% |
| 3644264 | 101.28.1.0 ↗ | alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins | 0.64 | 42.0 | 4.80e-01 | 74.3% | 96.0% |
| 4978412 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.63 | 52.0 | 3.96e-01 | 94.3% | 41.7% |
| 3685767 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 54.0 | 4.85e-01 | 97.1% | 76.0% |
| 3496240 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.63 | 48.0 | 4.63e-01 | 84.3% | 85.0% |
| 4445757 | 108.1.1.28 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 | 0.62 | 48.0 | 4.78e-01 | 85.7% | 88.0% |
| 5060856 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.62 | 52.0 | 4.34e-01 | 98.6% | 81.5% |
| 3647082 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 52.0 | 4.75e-01 | 97.1% | 72.6% |
| None | — | 0.61 | 51.0 | 3.29e-01 | 97.1% | 20.9% | |
| 3322119 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 50.0 | 4.08e-01 | 97.1% | 86.9% |
| 4946290 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 48.0 | 4.96e-01 | 95.7% | 96.9% |
| 3232086 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 46.0 | 4.23e-01 | 95.7% | 82.1% |
| 3783419 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 45.0 | 3.49e-01 | 94.3% | 52.4% |
| 3724312 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 44.0 | 4.19e-01 | 91.4% | 91.8% |
| 3281003 | 2007.1.14.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like | 0.54 | 36.0 | 2.86e-01 | 70.0% | 100.0% |
| 3735701 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.54 | 42.0 | 3.44e-01 | 85.7% | 85.1% |
| 9411 | 2003.1.5.26 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 | 0.54 | 43.0 | 2.75e-01 | 87.1% | 51.3% |
D2
medium
residues 1-52_222-258
D3
medium
residues 53-221_259-281
Domain cluster:
rep: hypothetical_protein_H012_gp354__YP_007354538__Acanthamoeba_polyphaga_moumouvirus__1269028__D9-184
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23162.2 best | AEP_C962R | 99.9 | 2.90e-28 | 78.1% | 75.1% |
D4
medium
residues 282-367
Domain cluster:
rep: putative_primase__YP_009506829__Tunisvirus_fontaine2__1421067__D281-379
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08707.17 best | PriCT_2 | 69.6 | 3.50e-19 | 83.7% | 90.9% |
D5
medium
residues 368-519
Domain cluster:
rep: D5_family_helicase__YP_009173524__Chrysochromulina_ericina_virus__455364__D416-543
D6
medium
residues 593-622_734-807
Domain cluster:
representative
D7
medium
residues 623-733
Domain cluster:
rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764