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D5_family_helicase

Euk-Vir

Chrysochromulina_ericina_virus

D5_family_helicase__YP_009173524__Chrysochromulina_ericina_virus__455364

Identity

Accession:
YP_009173524 ↗
Protein ID:
D5_family_helicase
Kingdom:
euk

Quality

75.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Chrysochromulina_ericina_virus

TaxID: 455364

Cluster

View cluster (27 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 837-903
PDB
Domain cluster: rep: D5_family_NTPase_ATPase__YP_010084866__Shrimp_hemocyte_iridescent_virus__2039780__D809-878
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dp7P00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 68.0 6.57e-01 98.5% 97.4%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 62.0 5.70e-01 97.0% 82.8%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 61.0 5.66e-01 97.0% 75.6%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 57.0 5.34e-01 92.5% 77.1%
3x1oA00 1.20.120.1790 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.68 58.0 4.58e-01 98.5% 51.0%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.68 58.0 5.55e-01 97.0% 93.8%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 61.0 5.47e-01 100.0% 86.8%
2m7bA00 1.10.10.1920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 57.0 5.45e-01 97.0% 90.9%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 5.02e-01 97.0% 73.6%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.64 44.0 4.60e-01 71.6% 85.5%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 5.53e-01 98.5% 98.4%
2yx8A00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.64 50.0 4.81e-01 89.6% 93.8%
2ma3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 4.95e-01 95.5% 72.7%
8gf5C01 3.30.70.470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 45.0 3.57e-01 77.6% 93.7%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.74e-01 97.0% 71.1%
1qd1B02 3.30.70.670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain 0.59 49.0 3.81e-01 91.0% 59.3%
1mkiA02 1.10.1500.10 Mainly Alpha › Orthogonal Bundle › Probable Glutaminase Ybgj; Chain: A, domain 2 › 0.59 49.0 3.88e-01 92.5% 89.1%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.58 45.0 4.32e-01 88.1% 92.4%
2be4A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 49.0 4.53e-01 100.0% 88.6%
1vw4801 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.56 40.0 3.96e-01 76.1% 75.3%
3vkgA09 1.20.920.30 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.54 43.0 3.48e-01 92.5% 64.6%
3ksrA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 44.0 3.17e-01 94.0% 53.2%
2be4A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 45.0 4.31e-01 100.0% 93.8%
2r1iA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 38.0 3.13e-01 80.6% 44.6%
4c0kA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 41.0 3.63e-01 89.6% 62.4%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029778 101.1.2.43 ↗ alpha arrays › HTH › HTH › winged helix domain › Pox_D5 0.86 79.0 7.10e-01 100.0% 87.8%
3954610 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 78.0 7.48e-01 100.0% 96.0%
4973290 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 76.0 7.52e-01 98.5% 100.0%
5081315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.84 75.0 7.24e-01 97.0% 98.7%
3480455 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.84 75.0 7.11e-01 100.0% 98.8%
3498779 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.83 75.0 6.93e-01 100.0% 92.9%
3938377 101.1.2.34 ↗ alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.81 73.0 6.72e-01 100.0% 89.4%
5057991 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 63.0 6.29e-01 89.6% 85.7%
5063915 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 61.0 6.09e-01 89.6% 82.9%
5041402 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 63.0 6.37e-01 89.6% 92.3%
5060192 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 62.0 6.27e-01 89.6% 92.3%
4967393 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 64.0 6.37e-01 97.0% 95.7%
5045249 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 65.0 6.00e-01 97.0% 84.7%
3987997 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 62.0 6.05e-01 94.0% 93.3%
5062064 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 62.0 5.97e-01 97.0% 92.3%
3628475 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 60.0 5.99e-01 92.5% 95.7%
3189296 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.71 60.0 4.58e-01 97.0% 52.4%
4022896 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 60.0 4.47e-01 97.0% 50.6%
5074322 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 61.0 5.84e-01 97.0% 83.5%
3739675 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.71 61.0 5.20e-01 97.0% 70.9%
5035389 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 59.0 5.52e-01 97.0% 74.1%
3479827 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 61.0 5.61e-01 97.0% 75.0%
4988433 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 5.72e-01 89.6% 100.0%
5048841 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.70 62.0 5.16e-01 100.0% 88.3%
3701463 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.70 60.0 5.55e-01 97.0% 75.3%
3927474 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.70 60.0 5.52e-01 97.0% 74.2%
3598367 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 60.0 5.41e-01 97.0% 71.0%
3935995 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.69 54.0 5.27e-01 88.1% 77.3%
3598997 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.69 59.0 5.49e-01 97.0% 82.4%
4927328 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 60.0 5.39e-01 100.0% 82.1%
3597746 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.68 59.0 5.57e-01 97.0% 86.3%
4982553 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 59.0 5.17e-01 100.0% 74.3%
3164500 101.1.1.47 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Mu_2 0.68 55.0 5.44e-01 91.0% 90.0%
3550061 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.67 57.0 4.98e-01 97.0% 66.7%
3462112 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.66 57.0 5.35e-01 98.5% 82.4%
3786852 101.1.2.4 ↗ alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.65 57.0 5.30e-01 98.5% 83.5%
5053839 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 55.0 5.34e-01 98.5% 85.3%
5049207 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 5.52e-01 97.0% 96.9%
4660104 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 5.54e-01 94.0% 96.9%
5003642 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.64 54.0 3.46e-01 95.5% 19.7%
3340355 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 46.0 4.56e-01 80.6% 72.9%
4024221 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.64 52.0 4.57e-01 89.6% 67.0%
3322119 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 4.25e-01 97.0% 45.5%
3496240 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.63 49.0 4.72e-01 86.6% 81.2%
5046208 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 55.0 5.31e-01 98.5% 92.0%
4678148 108.1.1.207 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › PF30486 0.63 51.0 3.92e-01 91.0% 42.5%
3522534 108.1.1.207 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › PF30486 0.62 51.0 3.91e-01 91.0% 43.9%
3616699 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 5.03e-01 97.0% 95.7%
3911871 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.60 50.0 4.53e-01 94.0% 76.8%
4259516 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.60 48.0 4.39e-01 88.1% 78.9%
5051738 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 4.72e-01 98.5% 87.1%
5043208 2006.1.4.10 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 0.57 39.0 3.13e-01 71.6% 75.6%
3983501 604.39.1.14 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › MreD 0.56 45.0 3.48e-01 91.0% 38.1%
5016400 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.56 46.0 3.19e-01 95.5% 38.8%
3592200 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.55 46.0 2.95e-01 91.0% 46.8%
4259071 4019.1.1.5 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Glutaminase 0.54 45.0 3.57e-01 92.5% 85.0%
5006565 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 4.12e-01 92.5% 100.0%
3504034 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.52 39.0 3.68e-01 80.6% 81.2%
3243484 532.2.1.0 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.52 41.0 3.82e-01 92.5% 84.4%
D2 medium residues 16-70
PDB
D3 medium residues 71-94_125-152_184-257
PDB
D4 medium residues 284-415
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08707.17 best PriCT_2 49.6 6.10e-13 59.9% 83.1%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gwnA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.54 34.0 3.59e-01 86.4% 70.8%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.54 38.0 3.99e-01 72.7% 82.6%
3frrA00 1.20.1260.60 Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 0.52 39.0 3.52e-01 78.8% 76.9%
1sk7A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.51 36.0 3.27e-01 72.7% 98.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4041102 3960.1.1.1 ↗ alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › AadA_C 0.54 29.0 3.24e-01 93.9% 62.9%
3320221 604.39.1.12 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › VTT_dom 0.54 46.0 4.00e-01 93.9% 85.9%
3244995 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.52 45.0 3.29e-01 93.2% 77.7%
3224291 197.1.1.3 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP 0.51 36.0 3.86e-01 75.0% 84.3%
D5 medium residues 416-543
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fnbA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.81 41.0 4.36e-01 86.7% 56.1%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.76 45.0 5.79e-01 89.1% 100.0%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.75 42.0 4.96e-01 90.6% 78.0%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.74 39.0 3.80e-01 87.5% 46.5%
3rkvA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.71 38.0 3.67e-01 87.5% 45.6%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.70 38.0 4.72e-01 83.6% 83.1%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 47.0 5.33e-01 86.7% 91.7%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.66 50.0 4.27e-01 78.9% 99.0%
2o8pA00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.64 46.0 3.81e-01 93.8% 42.5%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.64 47.0 5.05e-01 87.5% 88.2%
3pe0A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 44.0 4.84e-01 87.5% 90.1%
1r2jA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.63 45.0 4.31e-01 72.7% 92.4%
1k90B03 1.20.140.60 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.63 39.0 4.15e-01 81.2% 69.6%
4nswB01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.63 45.0 3.58e-01 74.2% 72.3%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.62 44.0 4.11e-01 72.7% 89.9%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 45.0 4.65e-01 89.1% 78.7%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.61 54.0 5.17e-01 97.7% 83.4%
6c1qB02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.61 50.0 3.88e-01 88.3% 76.0%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 40.0 3.89e-01 89.8% 59.7%
2xq9A02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.56 39.0 4.06e-01 96.9% 76.9%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.56 33.0 3.63e-01 91.4% 71.8%
4zudA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 45.0 3.65e-01 88.3% 80.1%
4gyvE00 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.55 46.0 3.88e-01 89.8% 85.1%
1ki1B01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.55 47.0 4.01e-01 90.6% 88.4%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.54 44.0 4.41e-01 93.0% 84.2%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.54 43.0 4.42e-01 89.1% 88.3%
3hiuD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 46.0 4.36e-01 89.8% 84.9%
4yonA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.54 46.0 3.88e-01 93.0% 85.6%
3onkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 38.0 3.71e-01 93.8% 67.9%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 45.0 3.87e-01 89.8% 67.2%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.52 44.0 3.00e-01 92.2% 90.7%
6tqpA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.52 33.0 3.27e-01 89.8% 58.8%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.51 35.0 3.47e-01 71.1% 85.1%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.50 42.0 4.04e-01 90.6% 94.7%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3622515 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.79 42.0 5.18e-01 90.6% 80.0%
4446713 604.11.1.1 ↗ alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S 0.76 36.0 4.64e-01 85.2% 77.3%
4238120 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.70 59.0 4.89e-01 88.3% 58.2%
3668500 650.1.1.0 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.69 47.0 5.12e-01 93.8% 84.8%
3737576 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.69 39.0 4.26e-01 82.8% 67.6%
3742811 604.6.1.1 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.67 44.0 4.68e-01 85.9% 73.9%
3319233 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.66 40.0 4.43e-01 89.8% 76.0%
1679505 4009.1.1.1 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.64 45.0 4.53e-01 72.7% 81.7%
3661812 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.63 50.0 4.64e-01 82.8% 90.0%
3503054 192.4.1.13 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Cactin_mid 0.63 36.0 3.18e-01 89.8% 40.0%
4674738 133.1.1.0 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) 0.63 54.0 4.44e-01 91.4% 89.5%
5075952 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.62 46.0 4.62e-01 94.5% 76.6%
3874130 133.1.1.5 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › DH_Alsin 0.62 54.0 4.53e-01 93.0% 94.3%
4951260 601.14.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.61 42.0 4.08e-01 95.3% 63.6%
3492118 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 45.0 3.52e-01 78.1% 67.7%
3719591 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.59 50.0 4.18e-01 90.6% 83.3%
3462100 604.1.1.102 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF8324 0.58 44.0 4.57e-01 86.7% 83.3%
3781569 109.46.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › CTLH 0.58 44.0 3.60e-01 78.1% 50.9%
4014274 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 40.0 3.34e-01 81.2% 41.8%
341832 4177.1.1.8 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.58 42.0 3.30e-01 75.8% 68.9%
4013484 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.57 48.0 4.08e-01 90.6% 80.5%
3972986 5067.1.1.0 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.56 49.0 4.15e-01 95.3% 64.7%
3524385 3881.1.1.2 ↗ alpha bundles › CNOT9 binding domain CN9BD (DUF3819) › CNOT9 binding domain CN9BD (DUF3819) › CNOT9 binding domain CN9BD (DUF3819) › Codanin-1_C 0.55 47.0 4.42e-01 93.8% 78.1%
5032990 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.55 29.0 3.65e-01 90.6% 90.0%
3419333 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.55 48.0 4.30e-01 96.1% 91.1%
3853901 310.2.1.20 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Codanin-1_C 0.54 46.0 3.37e-01 93.8% 34.2%
3772061 109.4.1.809 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Codanin-1_C 0.54 46.0 3.38e-01 93.8% 34.7%
3705376 5001.1.1.32 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Solute_trans_a 0.53 43.0 3.28e-01 87.5% 67.1%
3478793 133.1.1.0 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) 0.53 45.0 3.88e-01 90.6% 78.5%
3277476 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.53 42.0 4.01e-01 91.4% 72.0%
3894630 622.1.1.23 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › Cactin_mid 0.51 36.0 3.29e-01 91.4% 56.9%
3731622 109.1.1.26 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_N_3 0.51 47.0 3.72e-01 100.0% 87.6%
3776595 4177.1.1.16 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FAP206 0.51 45.0 3.39e-01 95.3% 94.4%
3880737 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.51 44.0 3.91e-01 94.5% 71.9%
4092572 601.31.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ › Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ › Rsd_AlgQ 0.51 43.0 4.03e-01 94.5% 80.0%
D6 medium residues 647-744
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
D7 medium residues 745-836
PDB
Domain cluster: representative