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DBP
Euk-VirMurine_adenovirus_3
DBP__YP_002822218__Murine_adenovirus_3__573199
Identity
- Accession:
- YP_002822218 ↗
- Protein ID:
- DBP
- Kingdom:
- euk
Quality
76.5
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Mastadenovirus›
Murine_adenovirus_3
TaxID: 573199
Cluster
View cluster (53 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 108-169
Domain cluster:
rep: dbp__YP_009162359__Equine_adenovirus_2__67603__D91-153
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02236.24 best | Viral_DNA_bi | 64.4 | 1.40e-17 | 100.0% | 74.7% |
D2
medium
residues 170-211_290-381_393-444
Domain cluster:
rep: DBP__YP_009162599__Skunk_adenovirus_PB1__1641642__D183-206_246-418
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03728.19 best | Viral_DNA_Zn_bi | 58.6 | 1.00e-15 | 47.3% | 96.9% |
D3
medium
residues 212-289
Domain cluster:
rep: DBP__YP_007347008__Bovine_adenovirus_6__111167__D124-183
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03728.19 best | Viral_DNA_Zn_bi | 48.0 | 2.20e-12 | 100.0% | 77.5% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4n6qA00 | 2.60.40.3960 | Mainly Beta › Sandwich › Immunoglobulin-like › Velvet domain | 0.57 | 43.0 | 3.32e-01 | 80.8% | 77.0% |
| 3v8hC00 | 3.30.572.10 | Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain | 0.57 | 46.0 | 3.20e-01 | 91.0% | 48.3% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.57 | 40.0 | 4.06e-01 | 87.2% | 76.0% |
| 1b7yB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.56 | 42.0 | 4.12e-01 | 80.8% | 90.7% |
| 3dgpB00 | 3.30.70.1220 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like | 0.55 | 32.0 | 3.44e-01 | 87.2% | 68.3% |
| 3h6eA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 43.0 | 3.12e-01 | 88.5% | 51.1% |
| 3ezjA03 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.53 | 31.0 | 3.47e-01 | 88.5% | 78.2% |
| 2uv8A06 | 3.30.70.2490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 33.0 | 3.45e-01 | 88.5% | 70.1% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.53 | 34.0 | 3.46e-01 | 88.5% | 66.2% |
| 2h1yA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.53 | 32.0 | 3.38e-01 | 91.0% | 67.1% |
| 2yweA03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.50 | 35.0 | 3.54e-01 | 89.7% | 72.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3722818 | 73.1.1.1 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA | 0.63 | 44.0 | 3.67e-01 | 74.4% | 81.4% |
| 3817259 | 387.1.5.15 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SLR1-BP | 0.57 | 37.0 | 4.39e-01 | 88.5% | 100.0% |
| 4964402 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.56 | 37.0 | 3.93e-01 | 89.7% | 75.7% |
| 3324707 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.56 | 42.0 | 3.80e-01 | 97.4% | 55.7% |
| 3999247 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.55 | 34.0 | 3.75e-01 | 88.5% | 78.3% |
| 3504246 | 4.1.1.60 ↗ | beta barrels › SH3 › SH3 › SH3 › YccV-like | 0.53 | 45.0 | 3.73e-01 | 100.0% | 64.5% |
| 5000808 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.53 | 33.0 | 3.85e-01 | 92.3% | 100.0% |
| 4080258 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.52 | 35.0 | 3.63e-01 | 70.5% | 86.7% |
| 4454499 | 4011.1.1.0 ↗ | beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins | 0.51 | 43.0 | 3.62e-01 | 98.7% | 69.7% |
| 4014318 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.51 | 33.0 | 3.23e-01 | 91.0% | 58.8% |
| 5074053 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.51 | 35.0 | 3.27e-01 | 92.3% | 54.3% |
| 4218542 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.51 | 31.0 | 3.38e-01 | 89.7% | 78.3% |
| 4456185 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.50 | 32.0 | 3.35e-01 | 87.2% | 68.0% |
| 4200948 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.50 | 38.0 | 3.55e-01 | 83.3% | 64.0% |