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DBP

Euk-Vir

Bat_adenovirus_2

DBP__YP_004782111__Bat_adenovirus_2__696069

Identity

Accession:
YP_004782111 ↗
Protein ID:
DBP
Kingdom:
euk

Quality

81.6 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Bat_adenovirus_2

TaxID: 696069

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 144-208_407-437
PDB
Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009109584__Simian_adenovirus_DM-2014__1560346__D107-191_400-428
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02236.24 best Viral_DNA_bi 61.4 1.20e-16 61.5% 68.3%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wb0X01 1.10.269.10 Mainly Alpha › Orthogonal Bundle › Adenovirus Single-stranded Dna-binding Protein, domain 1 › Adenovirus DNA-binding, N-terminal domain 0.94 83.0 7.62e-01 96.9% 75.2%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 52.0 4.72e-01 86.5% 65.4%
4rflA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.63 54.0 4.30e-01 95.8% 89.4%
4mo1A00 1.10.274.110 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.61 50.0 4.33e-01 88.5% 91.0%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 47.0 4.49e-01 85.4% 76.8%
3un6A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 51.0 4.10e-01 96.9% 90.6%
6mcjA00 1.10.2090.10 Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain 0.53 38.0 3.36e-01 75.0% 75.2%
2clbA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 38.0 3.17e-01 74.0% 88.1%
1l8qA03 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.52 42.0 4.11e-01 88.5% 89.7%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.52 36.0 3.37e-01 71.9% 68.6%
3cllA00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.52 41.0 3.09e-01 86.5% 77.2%
3nrkA01 1.10.4030.10 Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain 0.51 45.0 3.56e-01 96.9% 85.1%
2oayA01 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.51 44.0 3.60e-01 96.9% 87.8%
3b34A03 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.50 40.0 3.44e-01 88.5% 86.6%
3i7aA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.50 40.0 2.95e-01 88.5% 48.7%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.50 40.0 4.08e-01 87.5% 97.9%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 38.0 3.32e-01 81.2% 88.5%
4neiA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.50 45.0 3.07e-01 100.0% 36.4%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3431012 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.64 49.0 4.91e-01 91.7% 80.0%
3179939 2002.1.1.38 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TAL_FSA 0.59 52.0 3.51e-01 99.0% 43.3%
4945527 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.59 50.0 3.46e-01 91.7% 83.1%
4978840 140.1.1.0 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.58 40.0 3.27e-01 70.8% 85.7%
3173246 143.1.1.0 ↗ alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain 0.57 42.0 4.44e-01 89.6% 86.9%
3949818 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.55 39.0 3.40e-01 75.0% 85.8%
3419225 101.1.10.56 ↗ alpha arrays › HTH › HTH › Cyclin-like › PF28509 0.55 43.0 4.16e-01 85.4% 81.8%
4311571 162.1.1.1 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.55 45.0 4.32e-01 91.7% 83.6%
3436850 109.4.1.1269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.53 33.0 3.28e-01 90.6% 58.1%
3434561 101.1.6.36 ↗ alpha arrays › HTH › HTH › TrpR › PF28509 0.52 42.0 3.90e-01 90.6% 73.8%
3601904 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.52 43.0 3.84e-01 88.5% 88.9%
3404975 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.52 41.0 4.22e-01 88.5% 96.7%
3246622 7004.1.1.0 ↗ 0.50 32.0 3.34e-01 83.3% 68.9%
3997386 4953.1.1.33 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › PF31020 0.50 40.0 3.81e-01 87.5% 93.0%
3177803 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.50 34.0 3.50e-01 82.3% 71.6%
D2 medium residues 209-227_290-406
PDB
Domain cluster: rep: DBP__YP_009162599__Skunk_adenovirus_PB1__1641642__D183-206_246-418
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03728.19 best Viral_DNA_Zn_bi 62.1 8.80e-17 56.6% 79.6%
D3 medium residues 228-289
PDB
Domain cluster: rep: DBP__YP_007347008__Bovine_adenovirus_6__111167__D124-183
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03728.19 best Viral_DNA_Zn_bi 39.2 1.20e-09 100.0% 57.1%