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DBP

Euk-Vir

Bovine_adenovirus_6

DBP__YP_007347008__Bovine_adenovirus_6__111167

Identity

Accession:
YP_007347008 ↗
Protein ID:
DBP
Kingdom:
euk

Quality

88.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-94
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02236.24 best Viral_DNA_bi 87.3 1.10e-24 91.1% 91.1%
D2 high residues 105-123_184-333
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03728.19 best Viral_DNA_Zn_bi 85.6 4.20e-24 54.4% 99.0%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aduB02 3.90.148.10 Alpha Beta › Alpha-Beta Complex › Adenovirus Single-stranded DNA-binding Protein; domain 2 › Adenovirus DNA-binding, C-terminal domain superfamily/Adenovirus DNA-binding, zinc binding domain 0.86 67.0 7.29e-01 79.3% 99.3%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3457166 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 17.0 2.95e-01 79.9% 96.0%
D3 medium residues 124-183
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03728.19 best Viral_DNA_Zn_bi 42.0 1.60e-10 100.0% 59.2%
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fixA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 43.0 3.16e-01 73.3% 26.1%
2wnyA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.62 54.0 4.20e-01 100.0% 97.8%
2fsrA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 42.0 3.10e-01 73.3% 27.5%
3eo4D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 42.0 3.15e-01 73.3% 27.2%
7ovuA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 44.0 3.12e-01 78.3% 28.0%
2ex5A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 46.0 3.35e-01 90.0% 51.7%
1u6mA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 43.0 3.06e-01 76.7% 25.9%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 40.0 3.57e-01 70.0% 97.7%
1xkpC00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 42.0 3.31e-01 76.7% 79.4%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.58 42.0 3.34e-01 76.7% 57.6%
3zj0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 40.0 2.86e-01 75.0% 21.8%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.58 46.0 4.08e-01 93.3% 64.6%
2dpmA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 39.0 2.95e-01 71.7% 51.6%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.58 41.0 3.87e-01 76.7% 70.7%
2oh1C00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 39.0 2.94e-01 73.3% 75.0%
4n6qA00 2.60.40.3960 Mainly Beta › Sandwich › Immunoglobulin-like › Velvet domain 0.58 48.0 3.57e-01 100.0% 68.5%
5a72A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 46.0 3.56e-01 95.0% 62.4%
1wwzA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 39.0 2.94e-01 71.7% 65.6%
2fl4A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 40.0 3.38e-01 75.0% 46.2%
5ktaA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 39.0 2.90e-01 75.0% 25.8%
3fxtA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 39.0 3.45e-01 75.0% 47.8%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 46.0 3.64e-01 95.0% 75.7%
3v8hC00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.56 49.0 3.17e-01 100.0% 30.9%
2ijrA01 3.30.70.1270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Api92-like domains 0.56 46.0 4.03e-01 96.7% 96.9%
4yhxA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 44.0 3.52e-01 93.3% 71.6%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 37.0 3.38e-01 70.0% 95.3%
4bmhA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 39.0 2.77e-01 75.0% 22.3%
4xpkA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 38.0 3.00e-01 73.3% 31.2%
2kfpA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.55 38.0 3.11e-01 73.3% 80.8%
4avaA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 41.0 3.05e-01 85.0% 37.2%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 38.0 3.08e-01 73.3% 70.9%
3oc5A02 2.60.40.3240 Mainly Beta › Sandwich › Immunoglobulin-like › Vibrio cholerae toxin co-regulated pilus biosynthesis protein F, C-terminal domain 0.54 45.0 3.54e-01 96.7% 80.1%
2uytA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 45.0 3.04e-01 95.0% 63.1%
2y8yA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.53 44.0 3.94e-01 93.3% 91.9%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.53 37.0 3.19e-01 76.7% 84.3%
2uv8A06 3.30.70.2490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 36.0 3.52e-01 70.0% 62.7%
2lu2A00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 41.0 3.78e-01 88.3% 95.1%
1nv8A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 35.0 2.61e-01 73.3% 46.2%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.52 41.0 3.45e-01 93.3% 94.1%
5nslA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 40.0 2.48e-01 100.0% 12.6%
3fpwA01 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.51 35.0 2.82e-01 71.7% 71.2%
3lf7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 40.0 2.49e-01 100.0% 12.8%
2uvaG11 6.10.60.10 Special › Helix non-globular › Hydrophobic Seed Protein › 0.51 35.0 3.63e-01 73.3% 100.0%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 41.0 3.08e-01 95.0% 65.5%
4qjvA03 3.30.70.3110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 40.0 4.00e-01 88.3% 95.2%
3fezA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 41.0 3.13e-01 100.0% 66.9%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3222455 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.64 45.0 3.04e-01 75.0% 19.6%
None 0.63 45.0 3.04e-01 75.0% 23.3%
3947165 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.62 43.0 3.23e-01 73.3% 33.3%
169936 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 42.0 3.13e-01 71.7% 62.9%
3575946 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.61 44.0 3.14e-01 76.7% 27.0%
3647322 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 44.0 3.35e-01 80.0% 48.8%
5018285 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.61 42.0 3.53e-01 73.3% 40.9%
5001921 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 41.0 3.15e-01 73.3% 29.0%
3969288 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 41.0 3.06e-01 71.7% 26.7%
3911097 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.60 43.0 3.00e-01 76.7% 24.3%
None 0.60 44.0 3.04e-01 78.3% 27.3%
3208006 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.60 45.0 3.57e-01 81.7% 45.5%
3789655 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.59 41.0 3.45e-01 73.3% 43.8%
4004341 101.1.2.775 alpha arrays › HTH › HTH › winged helix domain › SieB 0.59 42.0 3.80e-01 76.7% 62.4%
4979282 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.59 40.0 2.97e-01 73.3% 24.4%
3934946 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 50.0 3.39e-01 96.7% 77.3%
3989733 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.59 40.0 2.96e-01 73.3% 26.1%
3602284 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 39.0 3.56e-01 70.0% 57.6%
4958453 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.58 41.0 3.03e-01 75.0% 26.3%
3590145 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.58 40.0 2.96e-01 73.3% 26.1%
5029321 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 3.19e-01 81.7% 60.0%
3266773 328.12.1.1 a+b two layers › IF3-like › IF3-like domain in Nudix hydrolase › IF3-like domain in Nudix hydrolase › Nudix_hydro 0.58 39.0 3.25e-01 75.0% 37.4%
3618900 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.58 48.0 4.09e-01 93.3% 69.0%
5083337 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.57 39.0 3.41e-01 71.7% 63.2%
3498155 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 38.0 2.84e-01 70.0% 26.5%
5013315 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 41.0 3.03e-01 76.7% 28.0%
5013439 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 40.0 3.43e-01 75.0% 46.0%
3379619 328.12.1.0 a+b two layers › IF3-like › IF3-like domain in Nudix hydrolase › IF3-like domain in Nudix hydrolase 0.57 39.0 2.58e-01 75.0% 15.5%
11089 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 40.0 3.05e-01 75.0% 32.9%
1877636 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.57 39.0 2.91e-01 75.0% 25.7%
4962674 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 39.0 2.92e-01 73.3% 25.9%
5031205 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 39.0 2.82e-01 73.3% 55.9%
5019208 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 38.0 2.98e-01 71.7% 69.7%
3435159 304.4.1.55 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › GUB_WAK_bind 0.56 46.0 3.44e-01 93.3% 39.6%
4962916 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 38.0 2.84e-01 73.3% 24.6%
5010763 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 41.0 2.99e-01 78.3% 44.3%
3407460 328.12.1.1 a+b two layers › IF3-like › IF3-like domain in Nudix hydrolase › IF3-like domain in Nudix hydrolase › Nudix_hydro 0.56 38.0 3.29e-01 75.0% 43.0%
4601006 213.1.1.27 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.56 37.0 2.86e-01 71.7% 33.1%
163433 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 38.0 2.88e-01 75.0% 25.7%
4999416 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 38.0 2.89e-01 73.3% 27.5%
1513116 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.55 38.0 3.01e-01 73.3% 31.4%
3973789 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 39.0 3.04e-01 76.7% 32.7%
4935395 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 37.0 2.92e-01 73.3% 28.9%
4979196 241.1.1.6 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN 0.55 40.0 3.16e-01 76.7% 79.2%
4858172 3517.1.1.2 a+b complex topology › Polymerase acidic protein › Polymerase acidic protein › Polymerase acidic protein › Bunya_RdRp 0.55 44.0 2.94e-01 100.0% 21.3%
1518821 304.7.1.8 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › ORF_2_N 0.53 40.0 3.23e-01 96.7% 39.2%
3958956 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 39.0 2.85e-01 81.7% 78.9%
2521280 241.5.1.1 a+b two layers › Type III secretory system chaperone-like › DNA-binding C-terminal domain of the transcription factor MotA › DNA-binding C-terminal domain of the transcription factor MotA › MotCF 0.52 36.0 3.05e-01 76.7% 79.1%
5008370 328.5.1.0 a+b two layers › IF3-like › SirA-like › SirA-like 0.52 38.0 3.57e-01 80.0% 65.3%
4552713 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 41.0 2.66e-01 91.7% 95.8%
3873624 304.9.1.6 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 0.51 44.0 3.41e-01 96.7% 48.1%
3755360 304.9.1.6 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 0.51 43.0 2.94e-01 96.7% 27.7%
3403645 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.51 34.0 3.45e-01 70.0% 76.7%
3436648 328.12.1.1 a+b two layers › IF3-like › IF3-like domain in Nudix hydrolase › IF3-like domain in Nudix hydrolase › Nudix_hydro 0.51 34.0 3.09e-01 73.3% 46.3%