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DBP

Euk-Vir

Bat_mastadenovirus_G

DBP__YP_009325347__Bat_mastadenovirus_G__2015376

Identity

Accession:: YP_009325347 ↗
Protein ID:: DBP
Kingdom:: euk

Quality

86.0 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Bat_mastadenovirus_G

TaxID: 2015376

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-43

PDB

D2 medium residues 75-164_356-404

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_009109584__Simian_adenovirus_DM-2014__1560346__D107-191_400-428

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02236.24 best	Viral_DNA_bi	88.0	6.40e-25	59.0%	97.5%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wb0X01	1.10.269.10	Mainly Alpha › Orthogonal Bundle › Adenovirus Single-stranded Dna-binding Protein, domain 1 › Adenovirus DNA-binding, N-terminal domain	0.91	73.0	8.01e-01	88.5%	97.4%
3f5cB00	1.10.565.10	Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor	0.61	43.0	3.98e-01	73.4%	79.8%
6he0A01	3.30.300.30	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain	0.58	33.0	3.70e-01	86.3%	71.0%
2iw5A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	40.0	4.48e-01	71.9%	91.7%
4r0mA02	3.30.300.30	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain	0.55	33.0	3.75e-01	87.8%	76.9%
4rflA02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.53	43.0	3.85e-01	87.8%	88.9%
1j0aA01	3.40.50.1100	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.53	46.0	3.99e-01	95.0%	87.3%
1jkwA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.53	37.0	3.43e-01	71.9%	84.7%
3no6A00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.53	41.0	3.43e-01	81.3%	80.0%
2oyoA02	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.51	35.0	3.64e-01	80.6%	76.0%
1q0gA00	1.20.120.400	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase	0.51	29.0	3.09e-01	76.3%	61.5%
1u9dA00	3.30.429.10	Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor	0.50	35.0	3.73e-01	97.8%	80.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3287311	109.4.1.2330 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF31120	0.56	35.0	3.97e-01	79.9%	82.9%
3979886	3759.1.1.2 ↗	alpha arrays › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Phage_antiter_Q	0.55	43.0	4.18e-01	83.5%	83.9%

D3 medium residues 165-179_249-355

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03728.19 best	Viral_DNA_Zn_bi	55.3	1.10e-14	59.0%	75.5%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1aduB02	3.90.148.10	Alpha Beta › Alpha-Beta Complex › Adenovirus Single-stranded DNA-binding Protein; domain 2 › Adenovirus DNA-binding, C-terminal domain superfamily/Adenovirus DNA-binding, zinc binding domain	0.85	82.0	7.72e-01	100.0%	92.3%

D4 medium residues 180-248

PDB

Domain cluster: rep: DBP__YP_007347008__Bovine_adenovirus_6__111167__D124-183

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03728.19 best	Viral_DNA_Zn_bi	48.8	1.20e-12	100.0%	66.3%