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DBP
Euk-VirPlodia_interpunctella_granulovirus
DBP__YP_009330199__Plodia_interpunctella_granulovirus__262175
Identity
- Accession:
- YP_009330199 ↗
- Protein ID:
- DBP
- Kingdom:
- euk
Quality
86.4
mean pLDDT
Taxonomy
TaxID: 262175
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 31-69_105-136_170-256
Domain cluster:
rep: DNA_binding_protein__YP_006908583__Epinotia_aporema_granulovirus__166056__D16-56_115-135_172-249_269-279
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04786.19 best | Baculo_DNA_bind | 69.3 | 5.00e-19 | 55.1% | 33.2% |
| PF04786.19 | Baculo_DNA_bind | 28.5 | 1.40e-06 | 25.9% | 12.6% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b9mB02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.52 | 24.0 | 3.33e-01 | 94.3% | 91.7% |
D2
medium
residues 70-104_137-169_257-281
Domain cluster:
rep: DBP__YP_003429390__Artogeia_rapae_granulovirus__362830__D66-100_139-170_249-268
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04786.19 best | Baculo_DNA_bind | 30.0 | 4.80e-07 | 52.7% | 19.0% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6tmfI00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.54 | 44.0 | 3.32e-01 | 87.1% | 67.8% |
| 6eudA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 41.0 | 3.37e-01 | 83.9% | 94.1% |
| 6zwwC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 3.30e-01 | 84.9% | 93.1% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3972491 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.54 | 48.0 | 2.98e-01 | 100.0% | 41.4% |
| 5081705 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 42.0 | 3.11e-01 | 83.9% | 85.9% |
| 4043415 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 41.0 | 2.64e-01 | 81.7% | 44.1% |
| 4012636 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.53 | 44.0 | 3.36e-01 | 93.5% | 75.8% |
| 3678667 | 304.31.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › HMG-CoA_red | 0.53 | 37.0 | 3.91e-01 | 84.9% | 81.2% |
| 5018514 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 40.0 | 3.49e-01 | 82.8% | 90.4% |
| 3215014 | 632.22.1.184 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › SMC_N | 0.50 | 38.0 | 2.44e-01 | 81.7% | 95.0% |
| 3263296 | 7516.1.1.35 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch | 0.50 | 36.0 | 2.43e-01 | 75.3% | 75.3% |