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DBP
Euk-VirSpodoptera_littoralis_nucleopolyhedrovirus
DBP__YP_009505835__Spodoptera_littoralis_nucleopolyhedrovirus__10456
Identity
- Accession:
- YP_009505835 ↗
- Protein ID:
- DBP
- Kingdom:
- euk
Quality
75.0
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Spodoptera_littoralis_nucleopolyhedrovirus
TaxID: 10456
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 41-284
Domain cluster:
rep: ssDNA_binding_protein__YP_009118586__Condylorrhiza_vestigialis_MNPV__1592576__D101-219_236-303
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04786.19 best | Baculo_DNA_bind | 213.8 | 3.90e-63 | 98.8% | 99.6% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4pofA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 28.0 | 4.16e-01 | 83.6% | 100.0% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 27.0 | 3.91e-01 | 75.4% | 94.6% |
| 4damC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 25.0 | 3.68e-01 | 70.9% | 94.0% |
| 3nwsA01 | 2.40.50.800 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 30.0 | 3.76e-01 | 83.2% | 91.5% |
| 1h2cA00 | 2.70.20.20 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain | 0.53 | 23.0 | 3.11e-01 | 74.2% | 74.2% |
| 3f1jA00 | 2.70.20.40 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Borna disease virus, matrix protein | 0.53 | 24.0 | 3.14e-01 | 75.0% | 71.4% |
| 6lbrA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 37.0 | 4.14e-01 | 88.1% | 92.9% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3644737 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 51.0 | 5.55e-01 | 86.5% | 99.0% |
| 3485632 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 27.0 | 4.01e-01 | 80.3% | 93.0% |
| 5012513 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.63 | 31.0 | 4.08e-01 | 84.8% | 83.7% |
| 5007515 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 32.0 | 3.70e-01 | 86.1% | 66.5% |
| 5004339 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 33.0 | 3.91e-01 | 86.1% | 75.6% |
| 4124823 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.51 | 20.0 | 3.03e-01 | 86.5% | 83.8% |