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DEAD-like_helicase

Euk-Vir

Acanthamoeba_polyphaga_moumouvirus

DEAD-like_helicase__YP_007354865__Acanthamoeba_polyphaga_moumouvirus__1269028

Identity

Accession:
YP_007354865 ↗
Protein ID:
DEAD-like_helicase
Kingdom:
euk

Quality

62.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Moumouvirus› Acanthamoeba_polyphaga_moumouvirus

TaxID: 1269028

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 73-195
PDB
D2 high residues 260-335
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.62 40.0 4.49e-01 98.7% 87.9%
4v15A01 2.40.37.20 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain 0.60 35.0 2.92e-01 100.0% 30.6%
1v58A01 3.10.450.70 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Disulphide bond isomerase, DsbC/G, N-terminal 0.56 44.0 4.60e-01 88.2% 91.5%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 31.0 3.38e-01 86.8% 63.9%
2ltlA00 3.30.1370.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Scaffold protein Nfu/NifU, N-terminal domain 0.55 39.0 3.40e-01 77.6% 47.9%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.54 43.0 4.02e-01 86.8% 89.4%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 46.0 3.75e-01 100.0% 86.0%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.54 28.0 3.23e-01 84.2% 70.6%
3g7qA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 46.0 3.74e-01 100.0% 56.4%
3dzzA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 46.0 3.81e-01 100.0% 59.2%
4p4mA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 41.0 3.63e-01 85.5% 93.9%
3d6kA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 46.0 3.64e-01 100.0% 53.4%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 33.0 3.68e-01 98.7% 84.2%
3t32A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 45.0 3.84e-01 100.0% 62.7%
6d0aA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 45.0 4.03e-01 100.0% 73.0%
4wh5A00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.52 40.0 3.28e-01 86.8% 53.8%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 45.0 3.57e-01 100.0% 64.5%
6t8qA00 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 45.0 2.86e-01 100.0% 19.6%
1yqeA01 3.40.630.50 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like 0.52 41.0 3.16e-01 100.0% 36.0%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 42.0 3.99e-01 100.0% 73.7%
4ix8A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 45.0 3.70e-01 100.0% 58.7%
4m2mA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 44.0 3.57e-01 100.0% 54.1%
3lm4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 42.0 3.56e-01 94.7% 71.3%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 44.0 3.92e-01 100.0% 74.3%
2cjgA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 43.0 3.53e-01 100.0% 50.0%
2x3lA01 3.90.1150.150 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.50 43.0 3.97e-01 100.0% 72.4%
2z67A00 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.50 43.0 2.75e-01 100.0% 20.8%
5f7uA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 34.0 3.47e-01 72.4% 100.0%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3596657 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.73 66.0 6.25e-01 100.0% 90.0%
3587545 375.1.1.198 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_2901 0.72 39.0 4.88e-01 73.7% 100.0%
3608052 809.2.1.4 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like › Herpes_UL52 0.69 60.0 5.54e-01 100.0% 85.0%
4028370 9.1.1.40 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Herpes_UL52 0.67 58.0 4.64e-01 100.0% 97.5%
4188110 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.59 39.0 4.14e-01 97.4% 78.5%
3636081 4972.1.1.1 ↗ beta barrels › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › DUF917_C 0.59 47.0 3.79e-01 88.2% 51.0%
5056676 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 34.0 3.11e-01 100.0% 43.0%
4944418 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 38.0 3.86e-01 90.8% 69.3%
4935941 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.56 32.0 3.12e-01 92.1% 47.1%
3282075 300.1.1.12 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DUF5753 0.55 44.0 3.30e-01 86.8% 81.5%
5074343 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.55 31.0 3.21e-01 92.1% 54.7%
3258701 192.8.1.295 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Spindle_Spc25 0.54 41.0 3.01e-01 82.9% 30.0%
4962615 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.54 32.0 3.04e-01 75.0% 46.3%
3474596 4099.1.1.17 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM2 0.54 47.0 3.91e-01 100.0% 68.6%
5040124 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 32.0 3.03e-01 75.0% 46.3%
5004113 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 31.0 3.15e-01 92.1% 54.7%
5005273 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 31.0 2.99e-01 92.1% 46.6%
4447623 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.54 37.0 3.58e-01 71.1% 75.3%
4666593 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.54 46.0 3.72e-01 100.0% 87.4%
5056769 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.54 31.0 3.00e-01 92.1% 46.1%
4947901 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 31.0 2.93e-01 92.1% 44.1%
5031493 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.53 31.0 3.13e-01 97.4% 53.8%
3272765 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.53 39.0 3.64e-01 78.9% 67.4%
4947251 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 30.0 2.72e-01 92.1% 35.7%
4928475 319.1.1.5 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.53 30.0 2.72e-01 92.1% 36.0%
3169657 4099.1.1.47 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30282 0.52 45.0 3.98e-01 100.0% 83.5%
3942967 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.52 37.0 3.73e-01 77.6% 83.7%
3850091 4099.1.1.17 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM2 0.52 45.0 3.32e-01 100.0% 42.3%
4603347 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 42.0 3.66e-01 100.0% 57.6%
3635423 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.51 43.0 3.31e-01 97.4% 42.7%
None — 0.51 43.0 3.22e-01 100.0% 43.7%
D3 high residues 385-544
PDB
Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF02399.22 best Herpes_ori_bp 40.1 2.00e-10 95.0% 13.7%
PF04851.22 ResIII 38.9 1.20e-09 66.9% 64.6%
D4 high residues 559-704
PDB
Domain cluster: rep: CP025712.1__AUO37541.1__YDC107_5424__00064__D413-546_602-643
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02399.22 best Herpes_ori_bp 33.3 2.20e-08 98.6% 15.2%
D5 high residues 720-768
PDB
D6 high residues 887-1027
PDB
D7 medium residues 1-69
PDB
D8 medium residues 822-875
PDB