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DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00075

Bact-Vir

DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00075

Identity

Kingdom:
phage

Quality

86.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-68
PDB
Domain cluster: rep: rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00068__D27-106
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24749.3 best DUF7695 64.4 8.60e-18 93.5% 94.8%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u83A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 48.0 4.17e-01 95.2% 74.3%
4pjeE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.13e-01 98.4% 69.4%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 47.0 3.06e-01 100.0% 20.9%
2q1mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 39.0 3.28e-01 79.0% 63.8%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 43.0 2.83e-01 96.8% 20.3%
5ee2A00 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.52 42.0 3.56e-01 100.0% 88.5%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 44.0 2.88e-01 100.0% 26.9%
2bonA02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 42.0 3.30e-01 96.8% 87.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4214410 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.65 53.0 5.00e-01 90.3% 85.3%
3705488 375.1.1.22 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD 0.61 40.0 4.55e-01 87.1% 93.3%
4959767 375.1.3.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.57 40.0 4.10e-01 93.5% 76.7%
4981108 375.1.1.331 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5817 0.57 39.0 4.33e-01 91.9% 97.8%
3846875 376.1.4.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.56 35.0 3.46e-01 77.4% 60.0%
5077070 375.1.3.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.56 37.0 3.82e-01 93.5% 71.7%
5027909 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 35.0 3.57e-01 90.3% 65.0%
4947213 375.1.3.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 0.56 38.0 3.97e-01 91.9% 80.0%
5030549 375.1.3.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.56 38.0 3.98e-01 91.9% 80.0%
3410744 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 3.53e-01 100.0% 40.0%
5060529 375.1.3.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.55 38.0 3.74e-01 93.5% 65.7%
5041477 375.1.3.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.55 38.0 3.89e-01 93.5% 75.0%
5034126 375.1.3.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.55 38.0 3.89e-01 93.5% 75.0%
5035898 375.1.3.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 0.54 37.0 3.76e-01 91.9% 73.3%
4969798 375.1.3.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.54 36.0 3.78e-01 88.7% 78.2%
4950325 375.1.3.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.54 37.0 3.36e-01 90.3% 51.8%
5075187 375.1.3.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.54 36.0 3.73e-01 90.3% 71.7%
3575826 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.53 33.0 3.51e-01 71.0% 76.0%
4817067 5.1.4.323 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_1st 0.53 38.0 2.83e-01 79.0% 61.7%
4198047 391.1.1.5 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.52 31.0 3.58e-01 72.6% 92.5%
4028456 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 33.0 3.81e-01 83.9% 91.1%
5045429 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 39.0 3.45e-01 83.9% 100.0%
1758949 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.51 40.0 3.37e-01 100.0% 86.0%
3537482 376.1.4.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.50 32.0 3.49e-01 74.2% 82.0%
3907697 376.1.4.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.50 34.0 3.23e-01 75.8% 57.3%
5038764 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.50 41.0 3.54e-01 100.0% 89.6%
4954545 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.50 40.0 3.54e-01 88.7% 92.2%