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DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00096
Bact-VirDGJ7_scaffold_2_2069_prodigal-single.1__X__X__00096
Identity
- Kingdom:
- phage
Quality
74.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-76
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.82 | 64.0 | 6.23e-01 | 90.0% | 78.2% |
| 3n3fA01 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.81 | 63.0 | 6.64e-01 | 90.0% | 100.0% |
| 1yu0A01 | 2.10.10.30 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.71 | 55.0 | 5.47e-01 | 100.0% | 82.4% |
| 3ejxA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.60 | 49.0 | 3.67e-01 | 100.0% | 45.6% |
| 1v95A01 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.60 | 49.0 | 3.86e-01 | 96.0% | 72.4% |
| 2km1A00 | 3.40.50.11000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Fe-S cluster assembly protein Dre2, N-terminal domain | 0.59 | 44.0 | 3.52e-01 | 86.0% | 95.7% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.57 | 46.0 | 3.62e-01 | 100.0% | 78.0% |
| 2v05A02 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.53 | 36.0 | 2.54e-01 | 72.0% | 39.6% |
| 2aaaA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 44.0 | 3.61e-01 | 100.0% | 77.5% |
| 6yubA02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.52 | 41.0 | 3.18e-01 | 90.0% | 73.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3528795 | 3761.1.1.0 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related | 0.89 | 67.0 | 7.05e-01 | 90.0% | 88.9% |
| 1505155 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.83 | 65.0 | 6.27e-01 | 90.0% | 76.8% |
| 3623217 | 3761.1.1.2 ↗ | beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer | 0.82 | 68.0 | 6.87e-01 | 100.0% | 90.0% |
| 4025635 | 874.1.1.0 ↗ | a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain | 0.72 | 64.0 | 4.27e-01 | 100.0% | 37.8% |
| 4183753 | 4126.1.1.6 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA | 0.70 | 61.0 | 3.89e-01 | 100.0% | 51.0% |
| 2075817 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.69 | 58.0 | 5.00e-01 | 100.0% | 91.9% |
| 4578847 | 702.1.1.3 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 | 0.65 | 50.0 | 3.05e-01 | 86.0% | 17.7% |
| 4444380 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.62 | 50.0 | 3.72e-01 | 100.0% | 62.6% |
| 4597935 | 286.1.1.0 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like | 0.60 | 48.0 | 3.61e-01 | 100.0% | 43.2% |
| 3211001 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.53 | 35.0 | 3.04e-01 | 70.0% | 53.3% |
| 4990602 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.53 | 44.0 | 3.09e-01 | 100.0% | 54.6% |
| 4003702 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.51 | 34.0 | 2.36e-01 | 70.0% | 60.5% |
| 260 | 1.1.5.22 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S32 | 0.50 | 41.0 | 2.88e-01 | 100.0% | 70.2% |
D2
high
residues 253-335
Domain cluster:
rep: BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00008__D242-335
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hnfA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 37.0 | 3.79e-01 | 90.4% | 58.2% |
| 2wsuA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 51.0 | 4.34e-01 | 97.6% | 74.8% |
| 2jj6A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 51.0 | 4.34e-01 | 95.2% | 76.1% |
| 3pnrB00 | 2.60.40.2020 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 48.0 | 4.21e-01 | 92.8% | 78.3% |
| 2wjsA03 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 51.0 | 4.13e-01 | 98.8% | 59.6% |
| 4i9xA00 | 2.60.40.3790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 46.0 | 3.54e-01 | 86.7% | 50.8% |
| 2nncA00 | 2.60.40.2470 | Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain | 0.57 | 42.0 | 3.89e-01 | 86.7% | 60.0% |
| 3hbkA00 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.56 | 48.0 | 3.58e-01 | 100.0% | 65.8% |
| 7s7rA01 | 2.60.40.2860 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 43.0 | 3.75e-01 | 89.2% | 98.6% |
| 4fe9A03 | 2.60.40.3620 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 47.0 | 4.29e-01 | 96.4% | 93.6% |
| 6u7iB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 35.0 | 3.43e-01 | 91.6% | 60.9% |
| 4mamB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 39.0 | 3.02e-01 | 77.1% | 44.1% |
| 1k3rA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 35.0 | 3.97e-01 | 78.3% | 98.3% |
| 3u7vA02 | 2.60.220.20 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › putative beta-Galactosidase from caulobacter crescentus | 0.51 | 39.0 | 3.32e-01 | 83.1% | 51.4% |
| 4bsjA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 39.0 | 3.57e-01 | 86.7% | 77.2% |
| 1f06A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 37.0 | 3.15e-01 | 77.1% | 94.2% |
| 2f2hA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 41.0 | 3.80e-01 | 90.4% | 97.2% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5053974 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.69 | 59.0 | 5.16e-01 | 91.6% | 72.5% |
| 5050314 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 39.0 | 3.72e-01 | 90.4% | 50.5% |
| 5043373 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.66 | 56.0 | 4.98e-01 | 94.0% | 89.2% |
| 5056110 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.65 | 56.0 | 4.74e-01 | 94.0% | 73.3% |
| 5027635 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.65 | 54.0 | 5.02e-01 | 94.0% | 88.0% |
| 4938033 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.64 | 55.0 | 5.06e-01 | 95.2% | 92.7% |
| 4175959 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.64 | 50.0 | 3.59e-01 | 85.5% | 98.0% |
| 4940715 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.64 | 53.0 | 4.88e-01 | 92.8% | 90.9% |
| 4948172 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.62 | 51.0 | 4.97e-01 | 92.8% | 98.9% |
| 3391240 | 10.1.1.4 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin | 0.60 | 52.0 | 4.21e-01 | 95.2% | 71.0% |
| 3481060 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.59 | 52.0 | 3.77e-01 | 97.6% | 49.6% |
| 3575027 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.58 | 49.0 | 4.68e-01 | 95.2% | 99.0% |
| 4939419 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.57 | 34.0 | 3.42e-01 | 77.1% | 58.8% |
| 4994079 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.57 | 33.0 | 3.48e-01 | 90.4% | 62.7% |
| 4981578 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 46.0 | 4.31e-01 | 100.0% | 75.2% |
| 4134480 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 42.0 | 3.47e-01 | 86.7% | 83.7% |
| 3849067 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 41.0 | 3.79e-01 | 85.5% | 75.5% |
| 5031409 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.52 | 34.0 | 3.40e-01 | 90.4% | 65.9% |
| 5055065 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 34.0 | 3.55e-01 | 75.9% | 76.0% |
| 3882033 | 11.1.1.560 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKAT_KLD | 0.51 | 39.0 | 3.40e-01 | 84.3% | 56.3% |