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DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00178
Bact-VirDGJ7_scaffold_2_2069_prodigal-single.1__X__X__00178
Identity
- Kingdom:
- phage
Quality
56.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 74-146
Domain cluster:
rep: PH2015_18_scaffold_2_prodigal-single.1__X__X__00327__D2-59
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.68 | 53.0 | 5.29e-01 | 94.5% | 80.3% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.68 | 54.0 | 5.31e-01 | 94.5% | 78.5% |
| 2zw2A00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.68 | 57.0 | 5.43e-01 | 90.4% | 100.0% |
| 5yjlB01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.68 | 59.0 | 4.63e-01 | 100.0% | 91.3% |
| 2cuwA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.62 | 51.0 | 4.94e-01 | 90.4% | 100.0% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.60 | 52.0 | 4.23e-01 | 98.6% | 88.1% |
| 1gx5A03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.59 | 49.0 | 4.21e-01 | 94.5% | 75.4% |
| 3b8mC01 | 3.30.1890.10 | Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like | 0.59 | 46.0 | 3.76e-01 | 87.7% | 100.0% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 51.0 | 4.59e-01 | 100.0% | 99.1% |
| 5e1qA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 38.0 | 3.52e-01 | 86.3% | 51.0% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.59 | 48.0 | 4.70e-01 | 90.4% | 100.0% |
| 5wm1A05 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.58 | 48.0 | 4.14e-01 | 91.8% | 63.2% |
| 2jpiA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.58 | 46.0 | 4.26e-01 | 89.0% | 100.0% |
| 2d73A03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 43.0 | 3.70e-01 | 98.6% | 51.3% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.56 | 46.0 | 3.64e-01 | 94.5% | 50.3% |
| 5wm1A02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.56 | 47.0 | 4.18e-01 | 97.3% | 82.6% |
| 1y7xA02 | 2.30.30.550 | Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat | 0.56 | 37.0 | 3.99e-01 | 94.5% | 89.3% |
| 2qv6A01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.55 | 47.0 | 4.00e-01 | 98.6% | 75.8% |
| 7r9xA02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.54 | 37.0 | 2.68e-01 | 72.6% | 81.2% |
| 3c65A00 | 3.30.420.340 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain | 0.54 | 40.0 | 3.26e-01 | 82.2% | 43.7% |
| 2k4vA00 | 3.30.160.370 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 | 0.53 | 42.0 | 3.65e-01 | 93.2% | 83.2% |
| 3p9xA00 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.53 | 37.0 | 2.86e-01 | 76.7% | 44.1% |
| 1iktA00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.50 | 37.0 | 3.32e-01 | 82.2% | 95.7% |
| 2avxA00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.50 | 40.0 | 3.16e-01 | 91.8% | 67.8% |
| 1vybA00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.50 | 37.0 | 2.71e-01 | 82.2% | 32.6% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.76 | 57.0 | 6.30e-01 | 90.4% | 98.3% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.76 | 58.0 | 6.33e-01 | 94.5% | 98.3% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.73 | 58.0 | 5.91e-01 | 94.5% | 87.1% |
| 3517068 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.73 | 57.0 | 6.05e-01 | 94.5% | 93.8% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.72 | 56.0 | 5.62e-01 | 94.5% | 81.3% |
| 3732370 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.71 | 53.0 | 5.73e-01 | 91.8% | 96.7% |
| 4947546 | 304.100.1.0 ↗ | a+b two layers › Alpha-beta plaits › PurS-like › PurS-like | 0.66 | 54.0 | 5.15e-01 | 87.7% | 98.8% |
| 4942818 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.62 | 55.0 | 4.43e-01 | 98.6% | 72.1% |
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.62 | 43.0 | 4.35e-01 | 93.2% | 72.0% |
| 3316326 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.61 | 53.0 | 3.60e-01 | 100.0% | 37.5% |
| 3609901 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.61 | 48.0 | 3.80e-01 | 87.7% | 94.4% |
| 4021474 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.61 | 51.0 | 4.04e-01 | 94.5% | 77.4% |
| 3723317 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.60 | 42.0 | 3.40e-01 | 91.8% | 38.4% |
| 3623001 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.60 | 47.0 | 4.58e-01 | 87.7% | 98.8% |
| 4326572 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.59 | 45.0 | 4.54e-01 | 91.8% | 82.7% |
| 4943657 | 304.128.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB › FtsX | 0.57 | 46.0 | 4.28e-01 | 91.8% | 97.9% |
| 2794904 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.57 | 41.0 | 4.33e-01 | 91.8% | 86.4% |
| 3568827 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 49.0 | 3.52e-01 | 97.3% | 56.8% |
| 3331421 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 44.0 | 4.65e-01 | 90.4% | 96.9% |
| 3577884 | 210.1.3.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_2 | 0.55 | 47.0 | 3.39e-01 | 100.0% | 37.1% |
| 3634674 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.55 | 48.0 | 3.10e-01 | 100.0% | 55.3% |
| 3402906 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.55 | 48.0 | 3.81e-01 | 98.6% | 84.7% |
| 3599309 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.55 | 45.0 | 3.27e-01 | 98.6% | 42.0% |
| 5000138 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.54 | 46.0 | 3.27e-01 | 95.9% | 41.7% |
| 2557261 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.54 | 40.0 | 3.75e-01 | 91.8% | 65.2% |
| 3615651 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 45.0 | 3.48e-01 | 97.3% | 76.0% |
| 3997886 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.53 | 47.0 | 3.31e-01 | 98.6% | 38.6% |
| 3944143 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.52 | 45.0 | 3.57e-01 | 100.0% | 56.2% |
| 4999285 | 886.1.1.2 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like | 0.51 | 43.0 | 3.24e-01 | 98.6% | 55.3% |
| 3262850 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.51 | 38.0 | 2.81e-01 | 83.6% | 60.4% |
| 3592204 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.51 | 35.0 | 2.24e-01 | 74.0% | 19.9% |
| 3539738 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.51 | 40.0 | 2.96e-01 | 90.4% | 64.9% |
| 3279662 | 10.12.1.20 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HgmA_C | 0.50 | 41.0 | 3.44e-01 | 98.6% | 50.4% |
| 4965230 | 212.1.1.12 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 | 0.50 | 36.0 | 3.02e-01 | 76.7% | 74.1% |
| 3829346 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.50 | 41.0 | 3.63e-01 | 95.9% | 73.9% |