←Back to structures
DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00182
Bact-VirDGJ7_scaffold_2_2069_prodigal-single.1__X__X__00182
Identity
- Kingdom:
- phage
Quality
68.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-113
Domain cluster:
rep: IMGVR_UViG_3300033990_000272-3300033990-Ga0373184_0008483_4516_5451__D198-306
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.77 | 71.0 | 5.34e-01 | 100.0% | 45.5% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.77 | 70.0 | 6.85e-01 | 100.0% | 91.6% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.76 | 68.0 | 5.62e-01 | 100.0% | 55.4% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.75 | 70.0 | 5.69e-01 | 100.0% | 56.3% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.75 | 67.0 | 6.71e-01 | 100.0% | 94.7% |
| 4trtA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.75 | 66.0 | 6.47e-01 | 100.0% | 87.7% |
| 1vpkA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.75 | 68.0 | 6.51e-01 | 100.0% | 85.9% |
| 2ix2A01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.73 | 65.0 | 5.12e-01 | 98.2% | 48.4% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.73 | 65.0 | 6.27e-01 | 100.0% | 86.3% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.73 | 65.0 | 6.35e-01 | 100.0% | 90.0% |
| 5wceA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.72 | 66.0 | 6.27e-01 | 100.0% | 89.9% |
| 4trtA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.69 | 59.0 | 5.84e-01 | 100.0% | 88.2% |
| 3hslX00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.68 | 61.0 | 4.56e-01 | 100.0% | 44.3% |
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.68 | 61.0 | 4.74e-01 | 100.0% | 47.0% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.64 | 48.0 | 4.98e-01 | 100.0% | 85.4% |
| 4dkmA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 41.0 | 3.40e-01 | 87.5% | 70.9% |
| 4chmB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 36.0 | 3.49e-01 | 74.1% | 96.0% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3480669 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.80 | 75.0 | 6.82e-01 | 100.0% | 90.2% |
| 3743107 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.80 | 75.0 | 6.89e-01 | 100.0% | 90.0% |
| 4943404 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.79 | 74.0 | 7.02e-01 | 100.0% | 89.2% |
| 3503503 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.79 | 73.0 | 6.66e-01 | 100.0% | 93.1% |
| 4599875 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.79 | 70.0 | 6.88e-01 | 100.0% | 89.2% |
| 4038410 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.78 | 72.0 | 6.63e-01 | 100.0% | 92.9% |
| 3804177 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.78 | 72.0 | 6.54e-01 | 100.0% | 94.5% |
| 4941928 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.77 | 72.0 | 7.02e-01 | 100.0% | 92.5% |
| 4542774 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.77 | 72.0 | 7.02e-01 | 100.0% | 92.5% |
| 3722114 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.77 | 71.0 | 6.34e-01 | 100.0% | 91.0% |
| 3478161 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.77 | 71.0 | 6.65e-01 | 100.0% | 92.6% |
| 3534499 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.77 | 71.0 | 6.49e-01 | 100.0% | 92.4% |
| 5056757 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.77 | 71.0 | 6.86e-01 | 100.0% | 88.8% |
| 4426056 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.77 | 71.0 | 6.29e-01 | 100.0% | 81.9% |
| 3787700 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.76 | 70.0 | 6.27e-01 | 100.0% | 95.5% |
| 4987602 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.76 | 71.0 | 6.82e-01 | 100.0% | 90.4% |
| 4437554 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.76 | 70.0 | 6.78e-01 | 100.0% | 88.8% |
| 4956739 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.76 | 70.0 | 6.79e-01 | 100.0% | 89.6% |
| 5052550 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.76 | 71.0 | 6.80e-01 | 100.0% | 92.8% |
| 426904 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.76 | 68.0 | 6.63e-01 | 100.0% | 87.8% |
| 1871494 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.75 | 68.0 | 6.62e-01 | 100.0% | 89.3% |
| 4302174 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.75 | 69.0 | 6.66e-01 | 100.0% | 88.8% |
| 4650306 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.75 | 68.0 | 6.70e-01 | 100.0% | 90.8% |
| 4360456 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.75 | 70.0 | 6.64e-01 | 100.0% | 86.2% |
| 3256904 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.75 | 69.0 | 6.63e-01 | 100.0% | 94.4% |
| 4234515 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.75 | 68.0 | 6.69e-01 | 100.0% | 91.7% |
| 3839477 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.75 | 69.0 | 6.69e-01 | 100.0% | 89.6% |
| 5043506 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.75 | 69.0 | 6.62e-01 | 100.0% | 88.8% |
| 3625037 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.75 | 69.0 | 6.46e-01 | 100.0% | 92.6% |
| 3387600 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.75 | 67.0 | 6.56e-01 | 100.0% | 90.0% |
| 1549269 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.75 | 66.0 | 6.49e-01 | 100.0% | 88.4% |
| 4939066 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.74 | 69.0 | 6.55e-01 | 100.0% | 89.1% |
| 4096140 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.74 | 68.0 | 6.59e-01 | 100.0% | 91.2% |
| 5000467 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.74 | 68.0 | 6.42e-01 | 100.0% | 92.6% |
| 3789625 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.74 | 68.0 | 6.41e-01 | 100.0% | 92.6% |
| 3081033 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.74 | 64.0 | 6.19e-01 | 93.8% | 92.1% |
| 309454 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.74 | 68.0 | 6.42e-01 | 100.0% | 85.6% |
| 3725759 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.74 | 68.0 | 5.85e-01 | 100.0% | 92.3% |
| 4480621 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.73 | 65.0 | 6.37e-01 | 100.0% | 89.2% |
| 3719897 | 227.1.1.18 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C | 0.73 | 67.0 | 6.46e-01 | 99.1% | 91.2% |
| 2987540 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.73 | 65.0 | 6.15e-01 | 100.0% | 82.3% |
| 4995028 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.73 | 67.0 | 6.46e-01 | 100.0% | 93.6% |
| 3558235 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.73 | 67.0 | 6.29e-01 | 100.0% | 90.4% |
| 4055466 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.73 | 67.0 | 6.48e-01 | 100.0% | 91.9% |
| 3251867 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.73 | 66.0 | 6.31e-01 | 100.0% | 90.0% |
| 3932751 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.73 | 66.0 | 6.33e-01 | 100.0% | 90.8% |
| 3251045 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.73 | 67.0 | 5.96e-01 | 100.0% | 75.3% |
| 3719304 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.72 | 66.0 | 6.25e-01 | 100.0% | 85.8% |
| 3598260 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.72 | 66.0 | 6.35e-01 | 99.1% | 96.0% |
| 3244229 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.72 | 66.0 | 6.34e-01 | 100.0% | 93.6% |
| 3406312 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.72 | 65.0 | 6.31e-01 | 100.0% | 93.5% |
| 3436491 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.71 | 64.0 | 5.69e-01 | 100.0% | 91.3% |
| 3507499 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.70 | 64.0 | 6.03e-01 | 100.0% | 94.1% |
| 3596476 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.70 | 63.0 | 5.80e-01 | 100.0% | 93.7% |
| 1924009 | 227.1.1.10 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP | 0.69 | 61.0 | 5.82e-01 | 100.0% | 87.2% |
| 2878142 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.68 | 61.0 | 5.95e-01 | 100.0% | 89.4% |
| 1178585 | 227.1.1.13 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_DNAp_acc | 0.68 | 61.0 | 5.69e-01 | 100.0% | 90.1% |
| 327025 | 6048.1.1.1 ↗ | a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 | 0.62 | 47.0 | 4.85e-01 | 100.0% | 84.0% |
| 4992755 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.56 | 31.0 | 3.45e-01 | 84.8% | 65.6% |
| 3972951 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.52 | 26.0 | 3.01e-01 | 86.6% | 64.0% |
| 3972828 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.51 | 44.0 | 3.73e-01 | 93.8% | 82.7% |
| 3971508 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.51 | 38.0 | 3.26e-01 | 79.5% | 74.7% |
| 5072620 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.51 | 40.0 | 3.31e-01 | 84.8% | 73.8% |
D2
high
residues 137-245