←Back to structures
DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00207
Bact-VirDGJ7_scaffold_2_2069_prodigal-single.1__X__X__00207
Identity
- Kingdom:
- phage
Quality
57.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 30-186
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3elbA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.62 | 46.0 | 4.60e-01 | 100.0% | 73.3% |
| 3ej3C00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.61 | 24.0 | 3.59e-01 | 86.6% | 84.4% |
| 3u62A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 36.0 | 3.96e-01 | 100.0% | 71.1% |
| 3oqbA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 41.0 | 4.31e-01 | 100.0% | 77.0% |
| 1wkbA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 53.0 | 3.91e-01 | 100.0% | 81.7% |
| 5xilA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.58 | 35.0 | 3.85e-01 | 100.0% | 71.9% |
| 2jh3A01 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 40.0 | 4.22e-01 | 100.0% | 78.9% |
| 3c8zA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 50.0 | 4.10e-01 | 100.0% | 76.6% |
| 3guvA00 | 3.40.50.1390 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain | 0.56 | 39.0 | 4.00e-01 | 100.0% | 73.2% |
| 2fm7A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.56 | 24.0 | 3.68e-01 | 86.0% | 100.0% |
| 2csxA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 50.0 | 4.51e-01 | 100.0% | 75.3% |
| 3eurA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 35.0 | 3.74e-01 | 100.0% | 72.1% |
| 3cz8A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 48.0 | 4.21e-01 | 100.0% | 89.0% |
| 4s3jB02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 48.0 | 4.06e-01 | 100.0% | 89.3% |
| 1pfkA01 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 40.0 | 3.80e-01 | 100.0% | 64.6% |
| 1gg1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 48.0 | 3.79e-01 | 100.0% | 86.1% |
| 3sp1A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 48.0 | 4.06e-01 | 100.0% | 77.2% |
| 2hoeA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 40.0 | 4.13e-01 | 79.0% | 97.4% |
| 1agyA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 38.0 | 3.50e-01 | 100.0% | 57.9% |
| 2pyyB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 33.0 | 3.68e-01 | 100.0% | 78.4% |
| 5im4F00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.53 | 32.0 | 3.44e-01 | 100.0% | 70.2% |
| 1e5xA01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 41.0 | 3.35e-01 | 86.0% | 44.4% |
| 3s6dA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 45.0 | 3.86e-01 | 100.0% | 90.4% |
| 3vmnA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 45.0 | 3.50e-01 | 100.0% | 81.8% |
| 1cpyA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 39.0 | 2.99e-01 | 78.3% | 86.8% |
| 1z05A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 38.0 | 3.92e-01 | 79.0% | 97.4% |
| 3ianA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 45.0 | 3.66e-01 | 100.0% | 87.8% |
| 3a9iA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 46.0 | 3.89e-01 | 100.0% | 80.3% |
| 2ap9B00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.50 | 44.0 | 3.62e-01 | 96.2% | 79.5% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3396418 | 7590.1.1.3 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi,ArgoMid | 0.62 | 39.0 | 3.75e-01 | 100.0% | 53.5% |
| 3204906 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.61 | 41.0 | 4.08e-01 | 100.0% | 64.2% |
| 5073144 | 2005.1.1.12 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e | 0.59 | 52.0 | 4.40e-01 | 100.0% | 88.0% |
| 3713154 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.58 | 45.0 | 4.64e-01 | 100.0% | 87.6% |
| 4997441 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.57 | 47.0 | 4.72e-01 | 100.0% | 85.3% |
| 4885816 | 375.1.1.10 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1e | 0.57 | 50.0 | 4.36e-01 | 100.0% | 91.4% |
| 3836058 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.57 | 46.0 | 4.74e-01 | 100.0% | 93.1% |
| 4401565 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 32.0 | 2.90e-01 | 70.1% | 38.6% |
| None | — | 0.56 | 50.0 | 4.39e-01 | 100.0% | 94.3% | |
| 4269941 | 2005.1.1.55 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1, tRNA-synt_1e, tRNA-synt_1g | 0.56 | 50.0 | 4.04e-01 | 100.0% | 73.1% |
| None | — | 0.56 | 50.0 | 4.24e-01 | 100.0% | 84.4% | |
| 4008847 | 7565.1.1.1 ↗ | a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase | 0.56 | 40.0 | 4.14e-01 | 100.0% | 78.6% |
| 4472771 | 2005.1.1.12 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e | 0.56 | 50.0 | 4.30e-01 | 100.0% | 92.9% |
| 4150792 | 2005.1.1.12 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e | 0.55 | 49.0 | 4.19e-01 | 100.0% | 81.1% |
| 3333830 | 2003.1.5.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 | 0.55 | 38.0 | 3.85e-01 | 86.6% | 70.8% |
| 3190180 | 2005.1.1.38 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTU2 | 0.55 | 49.0 | 3.72e-01 | 100.0% | 52.4% |
| 3733640 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.55 | 40.0 | 3.83e-01 | 100.0% | 65.6% |
| 3806233 | 2006.1.4.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN | 0.54 | 41.0 | 4.47e-01 | 98.7% | 99.2% |
| 3940369 | 2007.9.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain | 0.54 | 41.0 | 4.28e-01 | 79.0% | 97.2% |
| 5014919 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.54 | 40.0 | 3.50e-01 | 100.0% | 50.8% |
| 3703914 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.54 | 42.0 | 4.38e-01 | 99.4% | 89.7% |
| 5024038 | 2005.1.1.14 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct | 0.53 | 45.0 | 4.05e-01 | 91.1% | 74.0% |
| None | — | 0.53 | 35.0 | 3.66e-01 | 94.9% | 70.5% | |
| 5006226 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.53 | 41.0 | 4.45e-01 | 97.5% | 100.0% |
| 3590539 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.53 | 39.0 | 4.17e-01 | 76.4% | 100.0% |
| 3398484 | 2003.1.1.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › G6PD_N | 0.52 | 44.0 | 4.15e-01 | 100.0% | 73.3% |
| 2482182 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.52 | 43.0 | 3.98e-01 | 87.3% | 68.5% |
| 3206092 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 37.0 | 2.63e-01 | 100.0% | 22.9% |
| 3979131 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.51 | 38.0 | 3.81e-01 | 79.0% | 90.3% |
| 3175480 | 2005.1.1.23 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA_Me_trans | 0.50 | 45.0 | 3.90e-01 | 100.0% | 70.0% |
D2
medium
residues 192-263