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DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00208
Bact-VirDGJ7_scaffold_2_2069_prodigal-single.1__X__X__00208
Identity
- Kingdom:
- phage
Quality
57.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 43-132
D2
high
residues 706-764
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ragA02 | 1.10.10.430 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily | 0.76 | 57.0 | 5.47e-01 | 81.4% | 79.4% |
| 3un6A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.74 | 52.0 | 3.58e-01 | 72.9% | 72.9% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.73 | 57.0 | 4.96e-01 | 86.4% | 56.7% |
| 1akhB00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 53.0 | 4.89e-01 | 88.1% | 71.8% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 53.0 | 4.93e-01 | 100.0% | 66.7% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 52.0 | 4.07e-01 | 88.1% | 48.1% |
| 2dn0A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 49.0 | 4.55e-01 | 84.7% | 68.4% |
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 42.0 | 4.29e-01 | 76.3% | 89.1% |
| 1k8kG00 | 1.25.40.190 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 | 0.58 | 41.0 | 3.16e-01 | 76.3% | 36.0% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.57 | 48.0 | 4.21e-01 | 100.0% | 77.7% |
| 1r4wA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 47.0 | 3.25e-01 | 94.9% | 29.8% |
| 1ic8A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 36.0 | 3.14e-01 | 98.3% | 45.7% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4983508 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.81 | 62.0 | 5.89e-01 | 86.4% | 70.0% |
| 5053497 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.81 | 59.0 | 5.94e-01 | 78.0% | 86.7% |
| 3662725 | 101.1.1.217 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › RsmI_C | 0.78 | 56.0 | 5.81e-01 | 76.3% | 81.8% |
| 5004914 | 101.35.1.40 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DUF1699 | 0.78 | 56.0 | 5.69e-01 | 76.3% | 77.6% |
| 3704050 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 52.0 | 5.55e-01 | 71.2% | 88.0% |
| 3955500 | 101.1.2.655 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF732 | 0.75 | 58.0 | 5.31e-01 | 83.1% | 74.4% |
| 4944767 | 101.1.2.883 ↗ | alpha arrays › HTH › HTH › winged helix domain › Radical_SAM | 0.75 | 57.0 | 5.33e-01 | 86.4% | 65.3% |
| 5021144 | 101.1.1.545 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF1699 | 0.74 | 51.0 | 5.24e-01 | 71.2% | 76.4% |
| 2391944 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.73 | 56.0 | 4.92e-01 | 83.1% | 56.8% |
| 2507075 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.73 | 56.0 | 4.94e-01 | 83.1% | 58.8% |
| 3243495 | 101.1.1.289 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB | 0.72 | 54.0 | 5.56e-01 | 83.1% | 98.2% |
| 5017220 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 55.0 | 5.39e-01 | 84.7% | 89.2% |
| 5003561 | 101.1.1.545 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF1699 | 0.70 | 47.0 | 5.19e-01 | 71.2% | 93.3% |
| 4974452 | 101.43.1.0 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain | 0.69 | 53.0 | 5.46e-01 | 100.0% | 90.9% |
| 45208 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.68 | 52.0 | 5.25e-01 | 84.7% | 93.2% |
| 3660305 | 101.1.1.253 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_CLF_N | 0.68 | 49.0 | 5.13e-01 | 86.4% | 92.0% |
| 4967020 | 3054.1.1.0 ↗ | alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol | 0.67 | 58.0 | 4.51e-01 | 96.6% | 45.4% |
| 3707222 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 50.0 | 5.12e-01 | 81.4% | 92.7% |
| 3616203 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 49.0 | 4.31e-01 | 83.1% | 67.4% |
| 5052346 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 51.0 | 5.10e-01 | 98.3% | 93.3% |
| 3504540 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.61 | 45.0 | 4.68e-01 | 81.4% | 94.5% |
| 3737869 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 52.0 | 3.33e-01 | 100.0% | 87.3% |
D3
medium
residues 582-656
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sf9A02 | 2.30.30.340 | Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains | 0.77 | 53.0 | 6.05e-01 | 70.7% | 98.1% |
| 2e70A00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 51.0 | 5.22e-01 | 72.0% | 78.9% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 50.0 | 4.55e-01 | 73.3% | 53.9% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 54.0 | 4.95e-01 | 80.0% | 89.6% |
| 6o5cA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.71 | 49.0 | 4.95e-01 | 72.0% | 93.4% |
| 2vgeA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.71 | 49.0 | 3.50e-01 | 70.7% | 34.3% |
| 1wjrA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 56.0 | 4.63e-01 | 84.0% | 83.5% |
| 4g54A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.71 | 49.0 | 4.14e-01 | 72.0% | 48.0% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 50.0 | 5.42e-01 | 73.3% | 88.9% |
| 3nmzD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.70 | 48.0 | 4.67e-01 | 72.0% | 84.5% |
| 1ts9A00 | 2.30.30.210 | Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 | 0.69 | 61.0 | 5.56e-01 | 97.3% | 95.9% |
| 2aj2A01 | 3.40.1740.10 | Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like | 0.65 | 45.0 | 4.16e-01 | 72.0% | 88.7% |
| 3na2A00 | 3.40.1570.20 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › | 0.59 | 46.0 | 3.93e-01 | 89.3% | 86.2% |
| 1ei5A02 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 40.0 | 3.94e-01 | 72.0% | 92.7% |
| 3lovA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 41.0 | 3.34e-01 | 76.0% | 69.1% |
| 2ekhA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 49.0 | 4.86e-01 | 92.0% | 88.7% |
| 2ywlA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 40.0 | 3.13e-01 | 73.3% | 71.5% |
| 3htyA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.57 | 39.0 | 3.66e-01 | 70.7% | 100.0% |
| 2epdA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 46.0 | 4.66e-01 | 89.3% | 90.8% |
| 1okeB02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.57 | 39.0 | 3.89e-01 | 70.7% | 71.4% |
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 41.0 | 2.71e-01 | 78.7% | 37.7% |
| 3kd9A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 43.0 | 3.41e-01 | 88.0% | 78.4% |
| 4bs9A01 | 3.90.930.60 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.55 | 37.0 | 3.52e-01 | 77.3% | 56.8% |
| 1vjvA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 39.0 | 2.67e-01 | 81.3% | 28.4% |
| 5kmpB00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.53 | 38.0 | 2.46e-01 | 78.7% | 36.7% |
| 2fmlA02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.52 | 37.0 | 2.95e-01 | 77.3% | 92.1% |
| 2in5A00 | 2.40.360.10 | Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like | 0.52 | 45.0 | 3.28e-01 | 94.7% | 53.3% |
| 3fssA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 36.0 | 3.51e-01 | 77.3% | 91.9% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3598284 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.85 | 58.0 | 6.68e-01 | 73.3% | 96.4% |
| 4937423 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.83 | 57.0 | 5.46e-01 | 70.7% | 96.5% |
| 4031578 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.83 | 53.0 | 6.38e-01 | 70.7% | 98.0% |
| 4640515 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.83 | 53.0 | 6.35e-01 | 70.7% | 98.0% |
| 4151014 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.81 | 57.0 | 6.33e-01 | 73.3% | 93.3% |
| 3501560 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 56.0 | 5.24e-01 | 72.0% | 82.2% |
| 5064457 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.79 | 54.0 | 5.63e-01 | 78.7% | 75.7% |
| 4010317 | 4.1.1.395 ↗ | beta barrels › SH3 › SH3 › SH3 › PF27398 | 0.78 | 55.0 | 5.89e-01 | 73.3% | 84.6% |
| 4342110 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.78 | 53.0 | 5.43e-01 | 70.7% | 84.9% |
| 5038850 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.78 | 57.0 | 5.37e-01 | 77.3% | 72.2% |
| 4584943 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.77 | 55.0 | 5.68e-01 | 73.3% | 88.6% |
| 4205717 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.77 | 54.0 | 5.29e-01 | 72.0% | 78.8% |
| 4476045 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.77 | 53.0 | 5.48e-01 | 70.7% | 90.0% |
| 4124780 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.77 | 53.0 | 5.38e-01 | 70.7% | 84.9% |
| 4527355 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.77 | 52.0 | 5.44e-01 | 70.7% | 91.3% |
| 3933788 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 52.0 | 5.73e-01 | 70.7% | 100.0% |
| 4977469 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.76 | 54.0 | 5.65e-01 | 74.7% | 85.7% |
| 4264671 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.76 | 52.0 | 5.11e-01 | 70.7% | 77.5% |
| 5045214 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 53.0 | 5.45e-01 | 72.0% | 95.7% |
| 5001903 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 53.0 | 5.46e-01 | 72.0% | 84.3% |
| 4985969 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 53.0 | 5.89e-01 | 73.3% | 98.3% |
| 4104821 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.75 | 53.0 | 5.36e-01 | 73.3% | 86.7% |
| 5074749 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 57.0 | 5.91e-01 | 81.3% | 94.3% |
| 3821919 | 4.1.1.238 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 | 0.74 | 52.0 | 5.79e-01 | 76.0% | 91.7% |
| 3222051 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 52.0 | 5.62e-01 | 76.0% | 84.6% |
| 4660084 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.74 | 51.0 | 5.26e-01 | 70.7% | 89.9% |
| 4009281 | 219.1.1.65 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like | 0.74 | 51.0 | 4.55e-01 | 72.0% | 57.1% |
| 5054597 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.73 | 50.0 | 5.05e-01 | 70.7% | 93.3% |
| 4941512 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 57.0 | 5.88e-01 | 88.0% | 90.0% |
| 1391581 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.72 | 49.0 | 4.58e-01 | 70.7% | 61.3% |
| 139950 | 4.1.1.126 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5608 | 0.72 | 50.0 | 5.60e-01 | 73.3% | 98.2% |
| 3996278 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 56.0 | 4.78e-01 | 84.0% | 70.8% |
| 3713613 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 49.0 | 5.30e-01 | 72.0% | 98.5% |
| 5036621 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 49.0 | 5.54e-01 | 73.3% | 100.0% |
| 4118226 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 48.0 | 4.95e-01 | 70.7% | 88.6% |
| 4069793 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.70 | 48.0 | 4.94e-01 | 70.7% | 90.0% |
| 5057445 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.69 | 57.0 | 5.46e-01 | 88.0% | 92.9% |
| 4945344 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 54.0 | 3.52e-01 | 85.3% | 21.5% |
| 4359892 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.68 | 55.0 | 5.44e-01 | 88.0% | 85.0% |
| 3339169 | 4.1.1.415 ↗ | beta barrels › SH3 › SH3 › SH3 › PNPOx_N | 0.67 | 46.0 | 4.49e-01 | 72.0% | 85.9% |
| 4056584 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.66 | 46.0 | 4.52e-01 | 72.0% | 77.5% |
| 4990290 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.65 | 55.0 | 5.53e-01 | 90.7% | 97.3% |
| 4550532 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.55 | 44.0 | 4.18e-01 | 89.3% | 83.3% |
| 3306543 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.50 | 37.0 | 3.85e-01 | 78.7% | 94.3% |