Back to structures

DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00261

Bact-Vir

DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00261

Identity

Kingdom:
phage

Quality

79.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-56
PDB
CATH (78)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5f7pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.81 71.0 5.31e-01 100.0% 41.5%
1z05A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.80 70.0 5.03e-01 100.0% 35.7%
2w40A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.80 71.0 4.52e-01 100.0% 25.2%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.80 52.0 3.54e-01 100.0% 19.7%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.80 69.0 4.42e-01 98.1% 25.7%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.79 68.0 5.03e-01 98.1% 38.8%
2qm1B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.78 69.0 4.93e-01 100.0% 37.5%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.78 63.0 4.95e-01 100.0% 41.5%
2hoeA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.78 67.0 4.87e-01 100.0% 37.1%
3r8eA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.77 65.0 4.83e-01 98.1% 39.3%
1c9rA04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.77 67.0 5.35e-01 100.0% 52.3%
3vglA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.77 67.0 4.91e-01 98.1% 37.4%
2itmA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.77 66.0 4.28e-01 98.1% 26.1%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.77 64.0 5.27e-01 100.0% 51.0%
5nckA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.76 66.0 5.25e-01 98.1% 51.4%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.76 62.0 4.96e-01 98.1% 46.6%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.75 64.0 5.11e-01 98.1% 49.5%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.74 60.0 5.01e-01 98.1% 50.5%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.74 61.0 5.38e-01 92.5% 69.6%
1jlcB03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.73 50.0 3.72e-01 71.7% 30.8%
3u3gA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.73 63.0 4.68e-01 100.0% 43.6%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.73 59.0 3.56e-01 88.7% 19.8%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.73 56.0 5.83e-01 100.0% 95.8%
3brcA02 3.40.50.10150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit 0.72 62.0 4.83e-01 100.0% 49.2%
3t69A01 3.30.420.300 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain 0.72 58.0 5.23e-01 92.5% 72.0%
4o5fA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.71 62.0 4.73e-01 100.0% 77.2%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 61.0 5.69e-01 98.1% 77.3%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.71 61.0 4.55e-01 98.1% 38.5%
2iafA00 3.30.1330.90 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 0.71 50.0 3.63e-01 73.6% 74.3%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.71 60.0 4.77e-01 100.0% 44.9%
4e19A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.71 60.0 4.60e-01 100.0% 43.6%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.71 53.0 3.67e-01 81.1% 91.0%
4bc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.69 57.0 3.60e-01 98.1% 24.1%
3drnB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.69 59.0 4.34e-01 100.0% 80.7%
1n8jA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.67 57.0 3.98e-01 100.0% 69.9%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.67 54.0 4.05e-01 90.6% 42.0%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 52.0 3.26e-01 88.7% 22.2%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 45.0 3.52e-01 71.7% 34.2%
2f9wA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 56.0 4.40e-01 100.0% 76.3%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.65 48.0 3.50e-01 92.5% 28.8%
1coyA02 3.30.410.10 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › Cholesterol Oxidase; domain 2 0.65 48.0 3.48e-01 81.1% 51.6%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.65 49.0 4.63e-01 100.0% 66.7%
2zgoA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 55.0 3.91e-01 98.1% 41.9%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 54.0 4.96e-01 100.0% 87.8%
2bmxB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 54.0 3.86e-01 100.0% 69.8%
4eo3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 54.0 4.06e-01 100.0% 79.7%
2k5qA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.62 45.0 3.63e-01 77.4% 78.1%
3gkmA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 53.0 3.87e-01 100.0% 77.7%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 49.0 3.15e-01 90.6% 27.5%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 41.0 3.74e-01 84.9% 50.0%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 48.0 3.63e-01 84.9% 57.0%
1t4lB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 49.0 4.33e-01 100.0% 63.3%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 44.0 3.94e-01 83.0% 56.6%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 54.0 4.39e-01 100.0% 77.1%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.60 48.0 3.54e-01 98.1% 70.5%
1xvwA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 51.0 3.69e-01 100.0% 75.3%
6p2kB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 47.0 2.84e-01 88.7% 24.2%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 50.0 3.09e-01 100.0% 29.9%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.58 44.0 3.59e-01 84.9% 80.6%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 44.0 3.61e-01 88.7% 89.3%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 47.0 2.94e-01 96.2% 22.1%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 3.91e-01 100.0% 78.4%
5jr6A02 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.57 48.0 3.53e-01 100.0% 55.8%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 49.0 3.03e-01 100.0% 44.0%
2qubA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 43.0 2.67e-01 84.9% 70.8%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 38.0 3.68e-01 94.3% 63.9%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.65e-01 96.2% 50.0%
2nn6C00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.54 44.0 2.91e-01 100.0% 73.0%
2greA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 42.0 2.86e-01 92.5% 98.3%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.53 45.0 4.07e-01 92.5% 98.6%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.15e-01 84.9% 41.2%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.53 41.0 3.31e-01 100.0% 74.8%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 44.0 3.45e-01 100.0% 62.5%
2je6A01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.52 43.0 2.87e-01 100.0% 40.6%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.52 47.0 2.77e-01 100.0% 53.3%
1sjgA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.51 44.0 3.52e-01 100.0% 50.9%
3gmvX00 3.10.450.730 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain 0.51 43.0 3.10e-01 96.2% 51.3%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 45.0 3.66e-01 100.0% 71.0%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053933 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.85 52.0 4.81e-01 79.2% 50.8%
4345436 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.82 66.0 5.83e-01 100.0% 61.3%
1149912 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.82 74.0 5.58e-01 100.0% 43.9%
3955898 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.81 72.0 5.73e-01 100.0% 53.3%
3945182 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.80 72.0 5.72e-01 100.0% 52.4%
4956002 2484.4.1.0 mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like 0.80 62.0 4.89e-01 84.9% 57.3%
5078265 2484.1.1.6 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.80 71.0 4.55e-01 100.0% 23.3%
4188237 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.80 63.0 6.23e-01 100.0% 83.6%
3355734 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.79 69.0 5.52e-01 100.0% 50.9%
3957119 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.79 70.0 4.67e-01 100.0% 28.1%
3979131 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.79 68.0 4.81e-01 100.0% 33.3%
4243634 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.79 63.0 5.63e-01 100.0% 62.7%
3975175 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.79 68.0 5.21e-01 98.1% 45.0%
4936566 2484.1.1.21 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.79 68.0 4.31e-01 100.0% 19.4%
4297945 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.78 64.0 6.36e-01 100.0% 89.1%
4869677 4967.1.1.30 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › RVT_connect 0.78 57.0 5.90e-01 83.0% 84.0%
4183381 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.78 69.0 5.60e-01 100.0% 54.0%
4517494 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.77 65.0 4.92e-01 100.0% 39.2%
5079486 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.77 66.0 4.82e-01 96.2% 37.1%
3810495 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.77 66.0 5.44e-01 100.0% 62.0%
1007197 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.76 47.0 4.12e-01 79.2% 43.4%
3337433 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.76 66.0 5.82e-01 100.0% 76.2%
3284714 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.76 62.0 5.90e-01 100.0% 77.8%
7726 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.76 61.0 5.98e-01 100.0% 82.8%
3974688 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.76 60.0 6.21e-01 98.1% 94.0%
5075465 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.76 62.0 5.98e-01 100.0% 81.7%
3977273 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.76 64.0 4.76e-01 98.1% 37.9%
3814983 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.75 65.0 5.84e-01 100.0% 84.0%
3311932 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.75 64.0 5.80e-01 100.0% 84.0%
3464233 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.74 63.0 5.57e-01 100.0% 77.5%
3212107 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.73 54.0 3.45e-01 79.2% 18.8%
3510425 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.73 57.0 4.07e-01 84.9% 29.7%
3217858 220.1.1.37 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.73 57.0 3.85e-01 84.9% 30.0%
1148094 330.12.1.1 a+b two layers › dsRBD-like › Transcription regulator P7 › Transcription regulator P7 › Xp10_P7 0.73 63.0 5.73e-01 100.0% 86.3%
3886098 2484.1.1.120 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.73 60.0 4.10e-01 100.0% 25.8%
3215691 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.72 57.0 3.51e-01 84.9% 16.9%
3645494 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 62.0 4.02e-01 100.0% 24.1%
4967370 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.72 61.0 5.20e-01 98.1% 62.2%
4116094 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.71 58.0 4.57e-01 98.1% 42.6%
3303284 4325.1.1.6 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DDE_Tnp_4 0.70 62.0 5.03e-01 100.0% 71.0%
3430159 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.70 54.0 5.08e-01 96.2% 67.6%
3954708 4325.1.1.9 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26003 0.70 54.0 5.59e-01 100.0% 92.0%
3204490 2485.1.1.30 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Phe_hydrox_dim 0.70 59.0 4.00e-01 100.0% 75.7%
3334247 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 59.0 4.75e-01 100.0% 56.4%
3511091 220.1.1.145 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RASGAP 0.69 56.0 5.39e-01 90.6% 91.7%
3366565 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.68 57.0 4.64e-01 100.0% 51.8%
4957303 2484.1.1.330 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 0.68 52.0 3.13e-01 90.6% 12.0%
4561720 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.67 57.0 4.34e-01 92.5% 63.3%
3246974 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 57.0 4.75e-01 100.0% 60.0%
4129199 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.67 56.0 4.40e-01 100.0% 42.4%
4110965 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.67 55.0 4.21e-01 98.1% 38.6%
5008587 2484.1.1.330 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 0.67 51.0 3.23e-01 92.5% 15.9%
3436557 220.4.1.8 beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › ZGRF1-like_N 0.66 55.0 4.92e-01 98.1% 65.3%
153187 2485.1.1.4 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.66 56.0 4.19e-01 100.0% 82.6%
3392311 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 49.0 3.52e-01 84.9% 26.7%
4953417 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.65 57.0 5.25e-01 98.1% 85.7%
3533688 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 56.0 5.05e-01 100.0% 77.3%
2154386 2485.1.1.5 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA,1-cysPrx_C 0.65 56.0 3.76e-01 100.0% 56.2%
4931466 2484.1.1.330 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 0.65 49.0 3.59e-01 92.5% 27.9%
3701860 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 55.0 4.56e-01 98.1% 61.1%
4169299 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.64 55.0 4.38e-01 100.0% 47.7%
3853362 243.3.1.2 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cathelicidins 0.63 52.0 4.15e-01 96.2% 65.2%
3712058 2484.1.1.72 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › YqgF 0.63 54.0 3.89e-01 98.1% 56.2%
3574392 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 56.0 4.22e-01 98.1% 49.2%
4996926 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.61 51.0 4.58e-01 100.0% 78.8%
3217527 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.60 42.0 2.91e-01 73.6% 63.2%
3821886 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.59 47.0 4.31e-01 98.1% 66.7%
3733574 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.59 40.0 3.69e-01 77.4% 52.9%
3267765 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.58 48.0 3.95e-01 100.0% 52.7%
5018345 2485.1.1.82 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › ATP-synt_10 0.57 51.0 3.82e-01 100.0% 93.8%
3476051 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 3.57e-01 98.1% 48.3%
4930080 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.56 51.0 4.39e-01 100.0% 86.3%
4017407 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.54 47.0 4.30e-01 98.1% 91.4%
3600818 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 41.0 2.87e-01 84.9% 54.0%
3585414 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.53 44.0 3.51e-01 96.2% 45.5%
4003932 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.52 45.0 3.47e-01 98.1% 42.5%
4932340 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.52 45.0 4.08e-01 100.0% 92.0%
3260211 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.52 45.0 3.46e-01 100.0% 84.8%