Back to structures

DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00272

Bact-Vir

DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00272

Identity

Kingdom:
phage

Quality

87.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-94
PDB
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.68 42.0 3.50e-01 73.3% 36.9%
1ixmB02 3.30.565.30 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Sporulation initiation phosphotransferase B (SpoOB), C-terminal domain 0.68 40.0 3.74e-01 100.0% 46.4%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.67 38.0 4.26e-01 76.7% 70.4%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.67 53.0 5.60e-01 100.0% 98.7%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.62 45.0 4.23e-01 92.2% 61.6%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.61 53.0 4.48e-01 100.0% 94.3%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.59 38.0 4.07e-01 71.1% 77.3%
1bqsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.72e-01 74.4% 84.0%
4e19A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 39.0 3.48e-01 82.2% 48.9%
2n3gA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 42.0 4.51e-01 95.6% 98.6%
1e50B00 2.40.250.10 Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit 0.56 37.0 3.37e-01 76.7% 46.9%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.56 48.0 4.72e-01 100.0% 88.2%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 41.0 4.43e-01 96.7% 100.0%
3netB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 48.0 3.37e-01 100.0% 56.5%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 41.0 3.89e-01 78.9% 82.1%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 40.0 3.65e-01 77.8% 71.4%
2ehgA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 37.0 3.22e-01 82.2% 43.0%
4zi5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 48.0 3.55e-01 98.9% 84.1%
1r0mA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 40.0 3.66e-01 83.3% 77.7%
5l2pA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 46.0 3.26e-01 100.0% 86.6%
3obqA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 46.0 4.05e-01 100.0% 81.6%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 39.0 3.67e-01 97.8% 62.8%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 40.0 4.29e-01 92.2% 97.3%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.53 37.0 3.16e-01 83.3% 42.9%
7n0eB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 44.0 4.01e-01 100.0% 67.2%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 40.0 3.67e-01 82.2% 96.6%
1sezA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 3.70e-01 98.9% 93.9%
6kd0A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 46.0 3.19e-01 100.0% 91.3%
4wy5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 3.11e-01 100.0% 87.8%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.51 41.0 3.59e-01 96.7% 58.1%
3pgbA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 4.05e-01 100.0% 97.4%
6kmoB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 3.06e-01 100.0% 84.1%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 44.0 3.05e-01 98.9% 66.5%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029914 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.71 43.0 5.30e-01 84.4% 100.0%
3987123 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.69 48.0 4.89e-01 94.4% 73.3%
3231216 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 38.0 4.83e-01 83.3% 100.0%
4961150 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.66 51.0 5.13e-01 100.0% 80.6%
4935472 330.4.1.0 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 0.66 48.0 5.34e-01 93.3% 100.0%
4973433 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.66 51.0 5.11e-01 100.0% 83.3%
4965501 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.64 51.0 5.11e-01 100.0% 84.4%
3456692 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.64 39.0 4.53e-01 92.2% 91.5%
3651210 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 39.0 4.50e-01 92.2% 90.0%
1826875 330.13.1.1 a+b two layers › dsRBD-like › dGTP triphosphohydrolase inhibitor › dGTP triphosphohydrolase inhibitor › T7-like_gp12 0.64 52.0 5.38e-01 98.9% 95.3%
5000965 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.64 51.0 5.20e-01 100.0% 87.8%
4524129 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.64 55.0 5.45e-01 100.0% 92.6%
3718300 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 38.0 4.15e-01 80.0% 72.0%
3917054 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.63 56.0 5.06e-01 100.0% 96.8%
3513352 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.63 56.0 5.19e-01 100.0% 96.5%
3603056 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.63 49.0 5.22e-01 95.6% 100.0%
4132764 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.63 48.0 4.98e-01 100.0% 88.2%
4434012 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.63 49.0 5.08e-01 97.8% 89.4%
3248029 223.7.1.1 a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like 0.63 42.0 3.55e-01 74.4% 42.1%
4438684 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.63 49.0 5.03e-01 100.0% 89.3%
4416182 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.62 54.0 5.23e-01 100.0% 86.7%
3960733 330.8.1.1 a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.62 41.0 4.24e-01 74.4% 71.8%
5025341 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.62 51.0 4.96e-01 100.0% 81.0%
5013768 330.2.1.5 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.61 51.0 5.07e-01 100.0% 86.3%
3607857 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 49.0 4.80e-01 97.8% 79.0%
4964560 330.2.1.5 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.61 52.0 4.98e-01 100.0% 80.0%
3176193 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.60 53.0 5.01e-01 100.0% 99.1%
4609498 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.60 46.0 4.79e-01 98.9% 93.8%
3701914 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 50.0 4.98e-01 93.3% 91.6%
5018204 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.59 53.0 4.36e-01 98.9% 84.8%
4960250 330.2.1.5 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.59 50.0 4.86e-01 100.0% 85.0%
4330094 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 46.0 4.69e-01 97.8% 86.7%
3499841 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 45.0 4.56e-01 100.0% 85.6%
3451705 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.57 40.0 3.53e-01 100.0% 47.9%
5040123 330.2.1.5 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.56 45.0 4.43e-01 98.9% 81.0%
3819309 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.56 46.0 4.69e-01 95.6% 96.5%
4137393 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.55 42.0 3.58e-01 92.2% 49.3%
5001392 330.10.1.0 a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.55 45.0 3.80e-01 97.8% 51.2%
5011583 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.54 37.0 2.98e-01 75.6% 33.2%
3587662 330.18.1.0 a+b two layers › dsRBD-like › Anti-CRISPR protein AcrIIA6 › Anti-CRISPR protein AcrIIA6 0.54 41.0 4.16e-01 81.1% 80.0%
4026006 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 41.0 4.30e-01 95.6% 92.5%
3814983 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.54 38.0 4.14e-01 85.6% 90.7%
3628180 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 46.0 3.96e-01 100.0% 89.0%
3265334 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.53 45.0 4.31e-01 97.8% 95.5%
4289288 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.53 47.0 4.23e-01 100.0% 79.7%
4066540 223.1.1.134 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30516 0.53 40.0 3.17e-01 80.0% 75.8%
4297447 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 41.0 3.56e-01 95.6% 53.6%
4984607 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.53 42.0 4.13e-01 96.7% 82.1%
3585861 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 41.0 3.57e-01 95.6% 54.3%
3928293 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 41.0 3.86e-01 96.7% 67.8%
3965319 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.52 46.0 4.31e-01 100.0% 88.7%
3937984 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 40.0 3.90e-01 96.7% 76.0%
3235699 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 39.0 3.69e-01 95.6% 66.1%
4117857 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 37.0 3.54e-01 100.0% 64.8%
3177251 216.1.1.41 a+b two layers › UBC-like › UBC-like › UBC-like › PF29959 0.51 44.0 3.74e-01 100.0% 68.4%
3852952 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.51 40.0 4.14e-01 91.1% 98.8%
5045702 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 38.0 2.90e-01 84.4% 40.4%
4883407 883.1.1.8 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Grp7_allergen 0.50 42.0 3.46e-01 97.8% 92.5%
4978680 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.50 38.0 2.89e-01 84.4% 39.6%