←Back to structures
DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00275
Bact-VirDGJ7_scaffold_2_2069_prodigal-single.1__X__X__00275
Identity
- Kingdom:
- phage
Quality
87.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 110-162
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dq3A04 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.89 | 62.0 | 4.73e-01 | 77.4% | 34.2% |
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.79 | 56.0 | 4.64e-01 | 79.2% | 43.0% |
| 1xtfA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.60 | 46.0 | 2.80e-01 | 86.8% | 60.2% |
| 4kw3A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.59 | 46.0 | 2.99e-01 | 90.6% | 53.4% |
| 2e1mA05 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.58 | 41.0 | 3.56e-01 | 77.4% | 94.5% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.58 | 39.0 | 3.52e-01 | 71.7% | 69.2% |
| 4makB00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 40.0 | 3.71e-01 | 98.1% | 53.9% |
| 3hwcA01 | 1.10.3140.10 | Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1 | 0.56 | 47.0 | 3.51e-01 | 100.0% | 35.4% |
| 3zqcA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 40.0 | 3.84e-01 | 77.4% | 92.2% |
| 5eupA00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.55 | 45.0 | 3.60e-01 | 96.2% | 49.2% |
| 3w1gA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 45.0 | 3.45e-01 | 100.0% | 47.6% |
| 3c7jA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 40.0 | 3.49e-01 | 84.9% | 94.5% |
| 4navA00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.52 | 40.0 | 2.85e-01 | 86.8% | 91.2% |
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.51 | 38.0 | 2.78e-01 | 81.1% | 72.1% |
| 3ezjA03 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.51 | 38.0 | 3.86e-01 | 98.1% | 85.5% |
| 3c1dB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 35.0 | 3.40e-01 | 75.5% | 71.0% |
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.50 | 40.0 | 2.81e-01 | 98.1% | 36.7% |
| 5i41B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.50 | 39.0 | 3.61e-01 | 92.5% | 65.7% |
| 7febA03 | 3.40.50.12790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 | 0.50 | 35.0 | 3.07e-01 | 75.5% | 73.9% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4978933 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.82 | 64.0 | 5.78e-01 | 94.3% | 62.9% |
| 5078551 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.81 | 60.0 | 5.75e-01 | 86.8% | 70.0% |
| 4938256 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.76 | 52.0 | 4.71e-01 | 73.6% | 56.0% |
| 4528478 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.67 | 52.0 | 5.16e-01 | 94.3% | 83.6% |
| 4679946 | 3869.1.1.1 ↗ | alpha arrays › Mitochondrial 54S ribosomal protein L2 › Mitochondrial 54S ribosomal protein L2 › Mitochondrial 54S ribosomal protein L2 › Ribosomal_L27_C | 0.62 | 43.0 | 2.90e-01 | 73.6% | 43.9% |
| 1551401 | 3869.1.1.1 ↗ | alpha arrays › Mitochondrial 54S ribosomal protein L2 › Mitochondrial 54S ribosomal protein L2 › Mitochondrial 54S ribosomal protein L2 › Ribosomal_L27_C | 0.61 | 42.0 | 2.85e-01 | 73.6% | 44.7% |
| 4946594 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 45.0 | 3.72e-01 | 84.9% | 50.0% |
| 4057629 | 3869.1.1.1 ↗ | alpha arrays › Mitochondrial 54S ribosomal protein L2 › Mitochondrial 54S ribosomal protein L2 › Mitochondrial 54S ribosomal protein L2 › Ribosomal_L27_C | 0.57 | 39.0 | 2.71e-01 | 73.6% | 48.6% |
| 3676512 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.56 | 45.0 | 3.14e-01 | 100.0% | 55.5% |
| 4195219 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.55 | 44.0 | 3.78e-01 | 98.1% | 80.0% |
| 3883903 | 101.1.2.507 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 | 0.55 | 44.0 | 3.14e-01 | 98.1% | 36.0% |
| 3588649 | 3696.1.1.4 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › SNF2_assoc | 0.55 | 39.0 | 3.37e-01 | 75.5% | 68.2% |
| 3505829 | 101.1.2.507 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 | 0.55 | 44.0 | 3.34e-01 | 98.1% | 50.0% |
| 3611141 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.55 | 40.0 | 3.55e-01 | 79.2% | 57.5% |
| 5046083 | 3987.1.1.0 ↗ | a+b complex topology › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain | 0.54 | 41.0 | 3.54e-01 | 83.0% | 65.9% |
| 3941043 | 605.1.1.211 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › ATG9 | 0.54 | 40.0 | 2.39e-01 | 83.0% | 89.9% |
| 4999062 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.54 | 41.0 | 3.48e-01 | 86.8% | 53.7% |
| 4183916 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.53 | 44.0 | 3.03e-01 | 100.0% | 27.9% |
| 4586962 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.53 | 43.0 | 3.47e-01 | 98.1% | 70.8% |
| 4957076 | 101.1.9.134 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2067 | 0.53 | 40.0 | 3.91e-01 | 84.9% | 95.0% |
| 3974773 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 42.0 | 3.57e-01 | 98.1% | 81.0% |
| 4933456 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.53 | 39.0 | 3.57e-01 | 86.8% | 62.5% |
| 3532358 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 44.0 | 2.78e-01 | 100.0% | 42.8% |
| 3308386 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.52 | 42.0 | 2.99e-01 | 98.1% | 54.9% |
| 5036096 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 3.39e-01 | 92.5% | 80.0% |
| 3626670 | 101.1.15.1 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS | 0.52 | 38.0 | 3.38e-01 | 86.8% | 60.0% |
| 3320650 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.52 | 43.0 | 3.60e-01 | 98.1% | 70.0% |
| 4947701 | 101.1.2.882 ↗ | alpha arrays › HTH › HTH › winged helix domain › FeoA | 0.51 | 38.0 | 3.25e-01 | 86.8% | 53.0% |
| 3242475 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.51 | 37.0 | 3.16e-01 | 77.4% | 46.7% |
| 3903618 | 219.1.1.54 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 | 0.51 | 39.0 | 2.56e-01 | 92.5% | 90.3% |
| 5077394 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.50 | 40.0 | 3.25e-01 | 92.5% | 45.2% |
| 4933113 | 101.1.9.150 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Cas12f1-like_TNB | 0.50 | 36.0 | 2.89e-01 | 77.4% | 42.7% |
| 3187272 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 39.0 | 2.39e-01 | 92.5% | 33.0% |
| 3614888 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.50 | 38.0 | 3.05e-01 | 81.1% | 79.0% |
| 4251053 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.50 | 36.0 | 2.34e-01 | 77.4% | 21.6% |
D2
medium
residues 7-47
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bkxA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.89 | 80.0 | 7.61e-01 | 100.0% | 85.4% |
| 2e18A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.87 | 74.0 | 4.47e-01 | 100.0% | 15.2% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.84 | 68.0 | 6.01e-01 | 100.0% | 61.9% |
| 3hugA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 71.0 | 5.71e-01 | 100.0% | 50.0% |
| 4go1A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 69.0 | 6.32e-01 | 100.0% | 74.1% |
| 2o8xA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 67.0 | 5.92e-01 | 100.0% | 65.6% |
| 5fgmA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 69.0 | 5.91e-01 | 100.0% | 63.1% |
| 4nqwA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 65.0 | 5.73e-01 | 100.0% | 62.5% |
| 3ilvA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.77 | 67.0 | 3.94e-01 | 100.0% | 14.4% |
| 2cobA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.77 | 64.0 | 6.28e-01 | 100.0% | 88.6% |
| 2db7A01 | 6.10.250.980 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.75 | 51.0 | 4.71e-01 | 70.7% | 58.5% |
| 2gloA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 60.0 | 5.45e-01 | 100.0% | 71.2% |
| 2w7nA00 | 1.10.10.2690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.72 | 59.0 | 4.69e-01 | 100.0% | 43.6% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 58.0 | 4.46e-01 | 100.0% | 41.5% |
| 4jqfA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 58.0 | 4.98e-01 | 100.0% | 72.6% |
| 1in4A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 59.0 | 4.97e-01 | 100.0% | 58.9% |
| 6rnzA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 56.0 | 4.78e-01 | 92.7% | 56.1% |
| 2hyjA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 52.0 | 5.14e-01 | 92.7% | 91.3% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 48.0 | 4.28e-01 | 92.7% | 60.0% |
| 1hs7A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 44.0 | 3.47e-01 | 95.1% | 72.2% |
ECOD (70)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3206332 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.95 | 86.0 | 7.20e-01 | 100.0% | 61.5% |
| 3230500 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.93 | 86.0 | 7.45e-01 | 100.0% | 68.3% |
| 3625899 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.92 | 85.0 | 7.56e-01 | 100.0% | 74.5% |
| 3193121 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.91 | 83.0 | 7.45e-01 | 100.0% | 74.5% |
| 3505644 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.91 | 83.0 | 7.01e-01 | 100.0% | 63.1% |
| 3543608 | 101.1.2.361 ↗ | alpha arrays › HTH › HTH › winged helix domain › Myb_DNA-binding | 0.91 | 83.0 | 7.20e-01 | 100.0% | 68.3% |
| 3936881 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.91 | 83.0 | 6.81e-01 | 100.0% | 58.6% |
| 3516289 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.91 | 83.0 | 7.18e-01 | 100.0% | 68.3% |
| 3484368 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.91 | 82.0 | 6.94e-01 | 100.0% | 63.1% |
| 3490405 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.90 | 83.0 | 7.17e-01 | 100.0% | 68.3% |
| 3869694 | 101.1.2.361 ↗ | alpha arrays › HTH › HTH › winged helix domain › Myb_DNA-binding | 0.90 | 82.0 | 6.44e-01 | 100.0% | 51.2% |
| 3364277 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.90 | 82.0 | 6.30e-01 | 100.0% | 49.4% |
| 3922308 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.90 | 82.0 | 6.70e-01 | 100.0% | 64.3% |
| 4393383 | 101.1.1.62 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_24 | 0.90 | 76.0 | 7.67e-01 | 100.0% | 97.5% |
| 3929513 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.89 | 80.0 | 6.12e-01 | 100.0% | 45.6% |
| 3331810 | 101.1.1.67 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 | 0.89 | 81.0 | 6.37e-01 | 100.0% | 51.2% |
| 4017824 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.89 | 80.0 | 6.46e-01 | 100.0% | 64.0% |
| None | — | 0.89 | 75.0 | 4.52e-01 | 100.0% | 14.9% | |
| 3721414 | 101.1.1.67 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 | 0.89 | 79.0 | 7.73e-01 | 100.0% | 91.1% |
| 4945040 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.88 | 78.0 | 6.89e-01 | 100.0% | 73.3% |
| None | — | 0.88 | 75.0 | 4.50e-01 | 100.0% | 15.3% | |
| 5060563 | 101.1.1.544 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF1670 | 0.88 | 68.0 | 5.67e-01 | 90.2% | 50.0% |
| 3636036 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.87 | 77.0 | 6.77e-01 | 100.0% | 76.7% |
| 4072992 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.87 | 75.0 | 4.46e-01 | 100.0% | 14.2% |
| 3510637 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.86 | 78.0 | 5.57e-01 | 100.0% | 48.2% |
| 4023331 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.86 | 72.0 | 6.51e-01 | 100.0% | 69.1% |
| 3338165 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.86 | 76.0 | 6.67e-01 | 100.0% | 70.0% |
| 3200045 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.86 | 73.0 | 6.54e-01 | 100.0% | 70.0% |
| 3311133 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.86 | 76.0 | 6.03e-01 | 100.0% | 52.5% |
| 3267034 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.86 | 76.0 | 7.12e-01 | 100.0% | 90.0% |
| 3990780 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.85 | 75.0 | 6.23e-01 | 100.0% | 58.6% |
| 4038581 | 2005.1.1.47 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans | 0.84 | 70.0 | 4.18e-01 | 100.0% | 13.8% |
| 3926525 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.84 | 68.0 | 6.86e-01 | 100.0% | 95.0% |
| 3377610 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.84 | 72.0 | 6.84e-01 | 100.0% | 84.0% |
| 4520564 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.84 | 72.0 | 5.77e-01 | 100.0% | 50.0% |
| 3589532 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.83 | 71.0 | 5.38e-01 | 100.0% | 40.8% |
| 4238054 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.83 | 71.0 | 4.33e-01 | 100.0% | 16.3% |
| 3987867 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.83 | 71.0 | 6.71e-01 | 100.0% | 80.0% |
| 4663875 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.83 | 71.0 | 4.36e-01 | 100.0% | 16.7% |
| 3284469 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.83 | 72.0 | 5.88e-01 | 100.0% | 53.3% |
| 3951829 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.83 | 71.0 | 5.58e-01 | 100.0% | 47.1% |
| 3821373 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.82 | 71.0 | 6.53e-01 | 100.0% | 76.4% |
| 4237551 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.82 | 70.0 | 5.36e-01 | 100.0% | 42.1% |
| 4648784 | 2005.1.1.47 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans | 0.82 | 68.0 | 4.12e-01 | 100.0% | 14.4% |
| 4263013 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.82 | 66.0 | 4.01e-01 | 100.0% | 14.1% |
| 4303963 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.81 | 72.0 | 5.89e-01 | 100.0% | 54.7% |
| 3971395 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.81 | 70.0 | 5.72e-01 | 100.0% | 53.3% |
| 5002651 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.81 | 66.0 | 5.10e-01 | 100.0% | 41.1% |
| 4968016 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.81 | 67.0 | 4.89e-01 | 100.0% | 33.9% |
| 3971149 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.80 | 68.0 | 5.50e-01 | 100.0% | 50.0% |
| 4202221 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.80 | 68.0 | 5.78e-01 | 100.0% | 58.8% |
| 4383273 | 101.1.1.201 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Bot1p | 0.80 | 66.0 | 4.64e-01 | 100.0% | 29.2% |
| 3860590 | 101.1.1.101 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_40 | 0.80 | 67.0 | 6.38e-01 | 100.0% | 80.0% |
| 3959876 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.79 | 71.0 | 5.26e-01 | 100.0% | 41.0% |
| 3923891 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.79 | 68.0 | 6.43e-01 | 100.0% | 82.0% |
| 3967675 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.79 | 68.0 | 6.37e-01 | 100.0% | 80.0% |
| 4270967 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.79 | 68.0 | 5.01e-01 | 100.0% | 37.3% |
| 3283374 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.78 | 68.0 | 5.21e-01 | 100.0% | 43.2% |
| 3959929 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.78 | 69.0 | 5.52e-01 | 100.0% | 51.2% |
| 4244028 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.78 | 66.0 | 5.86e-01 | 100.0% | 66.7% |
| 4980021 | 101.1.3.33 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › DUF134 | 0.78 | 64.0 | 5.50e-01 | 100.0% | 57.1% |
| 3240443 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 64.0 | 5.82e-01 | 100.0% | 68.3% |
| 3927046 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 65.0 | 6.01e-01 | 100.0% | 83.6% |
| 3216945 | 101.1.1.102 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Lin-8 | 0.76 | 64.0 | 4.64e-01 | 100.0% | 45.5% |
| 4500830 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.74 | 62.0 | 5.84e-01 | 95.1% | 86.0% |
| 4167193 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.72 | 62.0 | 6.12e-01 | 100.0% | 100.0% |
| 5083774 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.71 | 64.0 | 6.20e-01 | 100.0% | 95.6% |
| 5056245 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.67 | 57.0 | 3.67e-01 | 100.0% | 22.5% |
| 4943733 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 51.0 | 4.45e-01 | 100.0% | 57.3% |
| 4954168 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.59 | 47.0 | 3.65e-01 | 100.0% | 47.7% |
D3
medium
residues 60-103
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2iw5B00 | 1.20.58.1880 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.81 | 70.0 | 4.99e-01 | 100.0% | 38.3% |
| 4wcgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 58.0 | 5.36e-01 | 100.0% | 90.2% |
| 1rr7A02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 53.0 | 5.19e-01 | 93.2% | 79.2% |
| 5hs7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 57.0 | 4.57e-01 | 100.0% | 63.3% |
| 4ijaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 56.0 | 5.15e-01 | 100.0% | 92.1% |
| 1rz4A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 57.0 | 4.59e-01 | 100.0% | 56.5% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 57.0 | 5.04e-01 | 100.0% | 71.6% |
| 1hw1A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 55.0 | 4.77e-01 | 100.0% | 88.0% |
| 3dteA02 | 1.10.10.1030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain | 0.67 | 51.0 | 5.18e-01 | 88.6% | 100.0% |
| 1ucrB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 53.0 | 4.70e-01 | 100.0% | 82.7% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 53.0 | 4.35e-01 | 100.0% | 56.8% |
| 5xe7A01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.64 | 49.0 | 3.61e-01 | 93.2% | 60.6% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 50.0 | 4.47e-01 | 95.5% | 62.0% |
| 4g6qA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 50.0 | 4.26e-01 | 100.0% | 71.3% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.60 | 47.0 | 2.95e-01 | 81.8% | 61.9% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 40.0 | 3.84e-01 | 72.7% | 72.7% |
| 3mw6B00 | 1.10.1710.10 | Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain | 0.57 | 46.0 | 3.82e-01 | 100.0% | 74.5% |
| 3n8hA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 48.0 | 3.26e-01 | 100.0% | 31.8% |
| 6gnaA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 44.0 | 2.94e-01 | 90.9% | 22.0% |
| 1tzvA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.56 | 46.0 | 3.32e-01 | 97.7% | 84.4% |
| 2cunA02 | 3.40.50.1260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain | 0.53 | 42.0 | 2.83e-01 | 95.5% | 33.3% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938254 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.89 | 77.0 | 6.43e-01 | 97.7% | 58.6% |
| 4003410 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.82 | 73.0 | 5.27e-01 | 100.0% | 45.0% |
| 3790320 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.82 | 73.0 | 6.39e-01 | 100.0% | 83.1% |
| 3914141 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 66.0 | 6.15e-01 | 93.2% | 76.4% |
| 3812411 | 101.1.1.69 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_7 | 0.79 | 69.0 | 5.37e-01 | 100.0% | 55.8% |
| 3243688 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.78 | 68.0 | 6.38e-01 | 100.0% | 90.9% |
| 5050961 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 63.0 | 6.54e-01 | 93.2% | 100.0% |
| 4449179 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 66.0 | 6.03e-01 | 100.0% | 80.0% |
| 3923654 | 101.1.1.356 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_11 | 0.77 | 65.0 | 5.98e-01 | 100.0% | 75.0% |
| 4963466 | 101.1.1.368 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 | 0.76 | 62.0 | 6.21e-01 | 100.0% | 93.3% |
| 3821495 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.76 | 65.0 | 4.77e-01 | 100.0% | 50.0% |
| 5074582 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 61.0 | 5.07e-01 | 100.0% | 63.5% |
| 5062051 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 60.0 | 5.43e-01 | 100.0% | 90.8% |
| 4965520 | 101.1.1.556 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF7317 | 0.73 | 63.0 | 5.90e-01 | 100.0% | 80.0% |
| 4989022 | 101.1.2.881 ↗ | alpha arrays › HTH › HTH › winged helix domain › UPF0175 | 0.73 | 61.0 | 6.16e-01 | 100.0% | 97.8% |
| 3586880 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.70 | 58.0 | 5.46e-01 | 97.7% | 80.0% |
| 4938493 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 58.0 | 4.52e-01 | 100.0% | 73.3% |
| 4972037 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 56.0 | 5.47e-01 | 97.7% | 90.0% |
| 3289244 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.68 | 57.0 | 5.11e-01 | 100.0% | 80.0% |
| 5033726 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.67 | 54.0 | 4.36e-01 | 100.0% | 55.0% |
| 4928591 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 54.0 | 4.94e-01 | 100.0% | 89.2% |
| 3733197 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.59 | 39.0 | 2.94e-01 | 70.5% | 28.8% |
| 4174315 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.58 | 49.0 | 4.22e-01 | 100.0% | 66.2% |
| 4952077 | 102.2.1.6 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › HI0933_like_1st | 0.56 | 48.0 | 4.20e-01 | 100.0% | 68.6% |
| 4929481 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.56 | 47.0 | 3.99e-01 | 100.0% | 60.0% |
| 5016168 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.54 | 44.0 | 3.78e-01 | 100.0% | 63.7% |