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DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00347

Bact-Vir

DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00347

Identity

Kingdom:
phage

Quality

90.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-69
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.87 65.0 5.93e-01 100.0% 61.6%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.85 62.0 6.64e-01 100.0% 91.7%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.84 62.0 6.49e-01 100.0% 86.5%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 62.0 5.25e-01 100.0% 51.1%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 60.0 5.77e-01 100.0% 70.3%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.78 72.0 5.91e-01 100.0% 62.9%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.74 51.0 4.05e-01 93.0% 36.9%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.21e-01 93.0% 51.2%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.67 62.0 5.77e-01 100.0% 91.3%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.66 59.0 4.73e-01 100.0% 52.3%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 47.0 4.04e-01 75.4% 51.1%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 53.0 3.83e-01 93.0% 68.6%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 58.0 5.12e-01 100.0% 67.9%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 52.0 3.65e-01 94.7% 66.7%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.63 55.0 4.31e-01 100.0% 82.0%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.62 52.0 4.16e-01 100.0% 60.6%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.61 48.0 3.51e-01 100.0% 29.4%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 51.0 3.52e-01 94.7% 68.0%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 49.0 3.46e-01 94.7% 69.1%
3q1nA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.60 48.0 3.07e-01 89.5% 39.5%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 50.0 3.52e-01 94.7% 71.7%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.60 49.0 4.66e-01 100.0% 77.3%
3s5tA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.60 48.0 3.68e-01 94.7% 94.1%
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 52.0 4.27e-01 98.2% 85.6%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.59 48.0 4.03e-01 94.7% 52.0%
2ihmB03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 43.0 3.51e-01 80.7% 95.6%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.58 52.0 3.47e-01 100.0% 34.1%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.58 50.0 5.02e-01 100.0% 96.6%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.57 45.0 3.20e-01 91.2% 96.4%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 47.0 3.49e-01 93.0% 58.4%
2fujA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 46.0 3.70e-01 91.2% 93.2%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.57 47.0 3.92e-01 93.0% 76.5%
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.57 46.0 3.74e-01 94.7% 92.7%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.57 44.0 3.82e-01 94.7% 78.3%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 45.0 3.55e-01 93.0% 88.1%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.57e-01 100.0% 86.4%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.56 46.0 3.62e-01 93.0% 71.8%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.56 43.0 3.89e-01 87.7% 71.1%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 45.0 3.49e-01 93.0% 76.1%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 42.0 2.68e-01 86.0% 24.8%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.55 46.0 3.62e-01 100.0% 100.0%
3f1tB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 44.0 3.41e-01 91.2% 78.7%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 3.47e-01 96.5% 91.9%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.53 43.0 3.18e-01 93.0% 70.5%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 3.22e-01 94.7% 67.9%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.53 43.0 3.45e-01 98.2% 97.7%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.52 38.0 3.15e-01 84.2% 68.9%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.52 42.0 4.10e-01 93.0% 84.1%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.50 41.0 3.35e-01 94.7% 93.3%
2cg8C01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.50 37.0 3.10e-01 86.0% 93.3%
5ds1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.42e-01 87.7% 97.8%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.50 37.0 2.97e-01 84.2% 37.0%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3222051 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.91 67.0 6.38e-01 100.0% 67.7%
3253111 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 60.0 4.93e-01 86.0% 87.6%
4026274 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 67.0 4.97e-01 100.0% 40.7%
3629316 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 62.0 5.08e-01 100.0% 52.0%
3795384 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 62.0 4.09e-01 100.0% 24.2%
3890362 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 61.0 5.73e-01 93.0% 85.7%
3833012 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.72 63.0 5.55e-01 100.0% 68.2%
3786412 4.1.1.344 beta barrels › SH3 › SH3 › SH3 › PF31193 0.72 63.0 5.69e-01 100.0% 75.0%
4073433 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 62.0 5.53e-01 100.0% 73.8%
3637664 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.69 60.0 4.77e-01 100.0% 52.5%
4196537 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.69 62.0 5.59e-01 98.2% 76.0%
3342814 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 62.0 5.20e-01 100.0% 75.8%
3834112 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 61.0 5.47e-01 100.0% 90.0%
3588727 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.74e-01 100.0% 81.4%
4944821 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.68 49.0 4.84e-01 77.2% 83.3%
4004815 4.1.1.166 beta barrels › SH3 › SH3 › SH3 › DUF2314 0.68 60.0 4.66e-01 100.0% 47.2%
4874232 4.1.1.29 beta barrels › SH3 › SH3 › SH3 › PSI_PsaE 0.68 63.0 5.84e-01 100.0% 89.9%
3459303 3270.1.1.0 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.68 58.0 4.89e-01 98.2% 83.0%
4278184 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.68 61.0 5.42e-01 100.0% 71.2%
3698096 219.1.1.115 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.67 57.0 4.10e-01 100.0% 43.9%
4581369 4.1.1.166 beta barrels › SH3 › SH3 › SH3 › DUF2314 0.66 58.0 4.79e-01 100.0% 59.0%
3459099 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.66 60.0 4.84e-01 100.0% 65.7%
3721062 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.65 55.0 4.93e-01 100.0% 81.2%
4373611 4237.1.1.1 beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.65 58.0 4.09e-01 100.0% 55.4%
3848399 4.8.1.24 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.64 53.0 5.07e-01 100.0% 78.6%
3592075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 56.0 4.93e-01 100.0% 76.5%
4555816 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 56.0 4.92e-01 100.0% 65.9%
3925589 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 57.0 5.29e-01 100.0% 88.6%
4000809 2.1.1.89 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.63 48.0 3.99e-01 80.7% 100.0%
4500974 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 53.0 4.14e-01 93.0% 67.5%
4220126 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 53.0 4.71e-01 100.0% 68.2%
3389662 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.62 54.0 4.84e-01 100.0% 73.8%
3607981 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.77e-01 98.2% 89.2%
4287081 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 50.0 3.91e-01 93.0% 72.0%
4263339 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.60 55.0 4.84e-01 100.0% 72.5%
2420862 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 49.0 3.70e-01 100.0% 80.9%
3729666 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.19e-01 100.0% 53.6%
3697694 4.1.1.288 beta barrels › SH3 › SH3 › SH3 › DUF6540 0.59 49.0 4.03e-01 100.0% 49.2%
3272782 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.59 43.0 4.54e-01 78.9% 95.9%
3443821 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.59 48.0 3.84e-01 93.0% 52.5%
3721314 219.1.1.93 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.58 49.0 4.01e-01 100.0% 48.7%
2773894 4041.1.1.2 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › rpo132 0.58 41.0 2.97e-01 77.2% 93.5%
4944961 4121.1.1.19 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF27230 0.58 48.0 2.99e-01 96.5% 29.6%
3943282 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 48.0 3.76e-01 93.0% 74.2%
3199555 219.1.1.93 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.56 47.0 3.78e-01 100.0% 46.4%
2867998 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.56 43.0 3.64e-01 87.7% 75.2%
3230984 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.56 40.0 3.12e-01 93.0% 32.1%
3721787 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.23e-01 100.0% 77.6%
5055184 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 45.0 4.04e-01 96.5% 83.5%
3290373 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.54 43.0 3.37e-01 94.7% 84.9%
4028738 5.1.4.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel 0.53 42.0 2.71e-01 94.7% 24.8%
1005601 9.1.1.25 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF4822 0.53 43.0 3.19e-01 93.0% 71.8%
3612141 719.1.1.5 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.53 41.0 3.33e-01 96.5% 55.8%
3959772 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 40.0 2.96e-01 86.0% 71.5%
3264554 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 40.0 2.56e-01 93.0% 23.1%
3239567 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 39.0 3.36e-01 89.5% 81.0%
3173222 4075.1.1.0 a+b complex topology › RGC domain › RGC domain › RGC domain 0.51 42.0 3.51e-01 100.0% 97.4%
5000301 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.50 39.0 3.30e-01 93.0% 77.4%