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DNA-3-methyladenine_glycosylase
Euk-VirPandoravirus_dulcis
DNA-3-methyladenine_glycosylase__YP_008318746__Pandoravirus_dulcis__1349409
Identity
- Accession:
- YP_008318746 ↗
- Protein ID:
- DNA-3-methyladenine_glycosylase
- Kingdom:
- euk
Quality
62.7
mean pLDDT
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 79-187
D2
medium
residues 53-76_191-255
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3s6iD01 | 1.10.1670.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › | 0.83 | 74.0 | 7.40e-01 | 94.4% | 96.7% |
| 2yg8A01 | 1.10.1670.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › | 0.82 | 72.0 | 7.02e-01 | 93.3% | 86.3% |
| 2h56A01 | 1.10.1670.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › | 0.81 | 70.0 | 6.62e-01 | 93.3% | 87.5% |
| 7craA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 45.0 | 4.48e-01 | 71.9% | 100.0% |
| 1rxqD00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.61 | 44.0 | 3.64e-01 | 76.4% | 97.6% |
| 3bvxA02 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.58 | 41.0 | 3.79e-01 | 71.9% | 80.2% |
| 2nsfA01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.58 | 40.0 | 3.35e-01 | 71.9% | 56.0% |
| 4is7A02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.57 | 38.0 | 4.14e-01 | 93.3% | 83.3% |
| 1eq1A00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.55 | 38.0 | 3.18e-01 | 73.0% | 95.8% |
| 3d6jA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 33.0 | 3.72e-01 | 89.9% | 85.1% |
| 5cqgA03 | 1.10.10.2210 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 40.0 | 4.18e-01 | 97.8% | 93.7% |
| 3d2eA06 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 35.0 | 3.34e-01 | 73.0% | 73.5% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3648524 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.91 | 84.0 | 6.03e-01 | 97.8% | 96.9% |
| 4973641 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.87 | 74.0 | 5.46e-01 | 89.9% | 99.5% |
| 4960404 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.86 | 74.0 | 5.48e-01 | 91.0% | 99.5% |
| 4441063 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.85 | 69.0 | 5.08e-01 | 86.5% | 94.0% |
| 3737199 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.83 | 74.0 | 5.44e-01 | 94.4% | 95.8% |
| 4591251 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.59 | 41.0 | 4.26e-01 | 73.0% | 91.8% |
| 4679869 | 632.15.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › HSP70 | 0.58 | 40.0 | 4.13e-01 | 73.0% | 91.8% |
| 4940179 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.57 | 42.0 | 3.52e-01 | 100.0% | 43.8% |
| 4940618 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.57 | 42.0 | 4.38e-01 | 100.0% | 87.5% |
| 3696312 | 604.39.1.12 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › VTT_dom | 0.56 | 37.0 | 3.23e-01 | 87.6% | 42.9% |
| 4940271 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.56 | 42.0 | 4.18e-01 | 100.0% | 77.8% |
| 4992431 | 3930.1.1.3 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical | 0.56 | 39.0 | 3.46e-01 | 95.5% | 50.4% |
| 3390993 | 601.7.1.21 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › NICE-3 | 0.55 | 38.0 | 3.76e-01 | 71.9% | 100.0% |
| 3236976 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.54 | 37.0 | 3.10e-01 | 70.8% | 70.0% |
| 3712359 | 150.3.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine | 0.53 | 36.0 | 2.87e-01 | 70.8% | 36.5% |
| 4946656 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.52 | 36.0 | 3.29e-01 | 71.9% | 89.2% |
| 3701783 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.51 | 34.0 | 3.52e-01 | 95.5% | 72.9% |