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DNA-binding_core_protein
Euk-VirRaccoonpox_virus
DNA-binding_core_protein__YP_009143378__Raccoonpox_virus__10256
Identity
- Accession:
- YP_009143378 ↗
- Protein ID:
- DNA-binding_core_protein
- Kingdom:
- euk
Quality
80.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Orthopoxvirus›
Raccoonpox_virus
TaxID: 10256
Cluster
View cluster (30 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 141-220
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03289.20 best | Pox_I1 | 142.4 | 2.50e-41 | 100.0% | 26.1% |
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7xc2A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 46.0 | 4.19e-01 | 71.2% | 99.1% |
| 3rheA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.58 | 32.0 | 2.91e-01 | 83.7% | 36.8% |
| 3aafA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 40.0 | 3.62e-01 | 72.5% | 89.9% |
| 1v72A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 44.0 | 4.15e-01 | 85.0% | 69.3% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 3.63e-01 | 71.2% | 81.0% |
| 1fg7A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 43.0 | 3.72e-01 | 85.0% | 67.4% |
| 4ritA01 | 3.90.1150.170 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.55 | 42.0 | 3.14e-01 | 83.7% | 38.7% |
| 2pb2B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 43.0 | 3.61e-01 | 85.0% | 53.5% |
| 5vyeA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 43.0 | 4.00e-01 | 85.0% | 67.6% |
| 2x3lA01 | 3.90.1150.150 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.55 | 42.0 | 3.90e-01 | 83.7% | 70.5% |
| 2cjgA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 42.0 | 3.46e-01 | 83.7% | 48.1% |
| 3g7qA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 39.0 | 3.27e-01 | 81.2% | 54.5% |
| 7xinA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 41.0 | 3.79e-01 | 86.3% | 76.1% |
| 3d6kA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 43.0 | 3.57e-01 | 93.8% | 92.5% |
| 4ix8A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 38.0 | 3.26e-01 | 78.8% | 58.7% |
| 4my5D01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 38.0 | 3.19e-01 | 80.0% | 51.9% |
| 8gzhC01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.53 | 45.0 | 3.52e-01 | 97.5% | 87.8% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 41.0 | 3.87e-01 | 86.3% | 77.6% |
| 3l8aA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 38.0 | 3.16e-01 | 78.8% | 53.2% |
| 6liuC02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 40.0 | 3.61e-01 | 85.0% | 73.3% |
| 3cbfA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 40.0 | 3.20e-01 | 85.0% | 45.1% |
| 2z61A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 40.0 | 3.25e-01 | 83.7% | 47.8% |
| 5xamA03 | 3.30.1360.200 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.52 | 37.0 | 3.27e-01 | 77.5% | 81.7% |
| 5yrzB00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.52 | 36.0 | 4.07e-01 | 80.0% | 100.0% |
| 3qguA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 38.0 | 3.27e-01 | 81.2% | 52.8% |
| 1vp4B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 38.0 | 2.98e-01 | 80.0% | 45.5% |
| 4iw7A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 39.0 | 3.53e-01 | 83.7% | 67.0% |
| 6d0aA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 37.0 | 3.44e-01 | 81.2% | 71.3% |
| 3asaA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 37.0 | 3.22e-01 | 80.0% | 59.0% |
| 4m2mA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 37.0 | 3.12e-01 | 81.2% | 53.5% |
| 4gotA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 36.0 | 3.35e-01 | 95.0% | 57.4% |
| 3eleC01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 39.0 | 3.20e-01 | 87.5% | 72.0% |
| 4obuA01 | 3.90.1150.170 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.50 | 39.0 | 2.88e-01 | 87.5% | 55.6% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3599691 | 178.1.1.0 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain | 0.67 | 61.0 | 5.75e-01 | 100.0% | 84.2% |
| 4941886 | 178.1.1.0 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain | 0.65 | 54.0 | 5.49e-01 | 100.0% | 92.5% |
| 3311421 | 4271.1.1.3 ↗ | alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N | 0.60 | 48.0 | 3.48e-01 | 87.5% | 43.9% |
| 3994712 | 3016.1.1.10 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P | 0.60 | 45.0 | 4.25e-01 | 86.3% | 66.0% |
| 4589701 | 3016.1.1.10 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P | 0.59 | 40.0 | 4.06e-01 | 72.5% | 71.2% |
| 4954689 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 39.0 | 3.85e-01 | 71.2% | 92.1% |
| 5006738 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.57 | 44.0 | 3.64e-01 | 85.0% | 52.0% |
| 3666427 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.56 | 46.0 | 3.73e-01 | 90.0% | 88.4% |
| 3935935 | 4271.1.1.3 ↗ | alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N | 0.56 | 50.0 | 3.60e-01 | 100.0% | 84.3% |
| 3261727 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.56 | 38.0 | 3.45e-01 | 71.2% | 83.5% |
| 3403705 | 4271.1.1.3 ↗ | alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N | 0.56 | 46.0 | 3.27e-01 | 90.0% | 82.9% |
| 4659912 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.55 | 43.0 | 2.73e-01 | 85.0% | 18.5% |
| 4281438 | 2005.1.1.5 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c | 0.55 | 43.0 | 2.99e-01 | 85.0% | 29.3% |
| 1839913 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.55 | 41.0 | 3.94e-01 | 82.5% | 76.8% |
| 3971712 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.54 | 37.0 | 3.26e-01 | 72.5% | 65.4% |
| 4191594 | 109.4.1.337 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ipi1_N | 0.54 | 38.0 | 2.45e-01 | 75.0% | 49.5% |
| 4233299 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.53 | 41.0 | 3.79e-01 | 83.7% | 76.2% |
| 2082959 | 154.1.1.1 ↗ | alpha bundles › Methyl-coenzyme M reductase alpha and beta chain-C › Methyl-coenzyme M reductase alpha and beta chain-C › Methyl-coenzyme M reductase alpha and beta chain-C › MCR_beta | 0.52 | 45.0 | 3.26e-01 | 100.0% | 71.1% |
| 3933800 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 38.0 | 2.60e-01 | 81.2% | 32.1% |
| 3223920 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 37.0 | 3.82e-01 | 88.7% | 82.7% |
| 3166717 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.51 | 31.0 | 3.39e-01 | 88.7% | 75.4% |
| 3932590 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 37.0 | 2.32e-01 | 81.2% | 20.2% |
| 1837558 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.50 | 38.0 | 3.55e-01 | 85.0% | 63.6% |
| 3746655 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.50 | 41.0 | 2.41e-01 | 92.5% | 81.9% |
| 1193916 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.50 | 37.0 | 3.55e-01 | 82.5% | 82.2% |
D2
high
residues 228-300
Domain cluster:
rep: DNA-binding_virion_core_protein_I1L__YP_009162452__Salmon_gill_poxvirus__1680908__D301-374
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03289.20 best | Pox_I1 | 128.3 | 4.70e-37 | 100.0% | 23.8% |
D3
medium
residues 53-138
Domain cluster:
rep: DNA-binding_virion_core_protein__YP_784255__Nile_crocodilepox_virus__1285600__D50-137
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03289.20 best | Pox_I1 | 131.7 | 4.30e-38 | 100.0% | 28.3% |