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DNA-binding_protein

Euk-Vir

Psittacine_aviadenovirus_B

DNA-binding_protein__YP_009508610__Psittacine_aviadenovirus_B__2169709

Identity

Accession:
YP_009508610 ↗
Protein ID:
DNA-binding_protein
Kingdom:
euk

Quality

72.8 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› Psittacine_aviadenovirus_B

TaxID: 2169709

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 100-199
PDB
Domain cluster: rep: DNA-binding_protein__YP_009310439__Pigeon_adenovirus_2__1907767__D135-204
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02236.24 best Viral_DNA_bi 105.6 2.00e-30 78.0% 98.7%
D2 medium residues 200-273
PDB
Domain cluster: rep: DBP__YP_007347008__Bovine_adenovirus_6__111167__D124-183
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03728.19 best Viral_DNA_Zn_bi 55.7 8.70e-15 97.3% 65.3%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ex5A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.63 44.0 3.29e-01 74.3% 52.2%
1b7yB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.60 46.0 4.40e-01 82.4% 96.5%
5a72A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 41.0 3.30e-01 75.7% 63.1%
5ktaA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 37.0 2.86e-01 70.3% 93.3%
1qd1B02 3.30.70.670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain 0.54 39.0 3.25e-01 78.4% 87.6%
3pcoB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.54 44.0 4.11e-01 90.5% 89.4%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 42.0 3.04e-01 86.5% 56.8%
3h6eA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 40.0 2.94e-01 83.8% 82.6%
2uytA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 40.0 2.89e-01 83.8% 86.1%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 40.0 3.17e-01 82.4% 69.8%
3v8hC00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.53 42.0 2.93e-01 90.5% 47.2%
3vmnA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 36.0 3.02e-01 74.3% 61.3%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 38.0 3.21e-01 82.4% 75.7%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.51 39.0 3.36e-01 82.4% 94.1%
3i8bA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 38.0 2.85e-01 83.8% 87.6%
2ijrA01 3.30.70.1270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Api92-like domains 0.51 42.0 3.93e-01 95.9% 99.0%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 34.0 2.93e-01 71.6% 93.8%
1uw4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 37.0 3.50e-01 78.4% 90.1%
2c42A05 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 40.0 3.45e-01 86.5% 94.0%
2y8yA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.50 38.0 3.63e-01 81.1% 91.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2770744 2003.1.2.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.62 46.0 3.42e-01 81.1% 37.3%
3947165 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.59 40.0 3.25e-01 70.3% 36.0%
4479273 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.59 43.0 3.65e-01 79.7% 78.5%
4999416 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 36.0 2.88e-01 71.6% 30.0%
3288999 213.1.1.25 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.56 38.0 2.95e-01 70.3% 97.7%
3523305 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.56 41.0 3.29e-01 77.0% 51.4%
4200948 242.1.1.2 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.55 41.0 3.78e-01 82.4% 64.0%
3504246 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.55 42.0 3.42e-01 86.5% 63.2%
3853324 328.12.1.1 ↗ a+b two layers › IF3-like › IF3-like domain in Nudix hydrolase › IF3-like domain in Nudix hydrolase › Nudix_hydro 0.54 34.0 3.16e-01 71.6% 48.0%
4962674 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 36.0 2.85e-01 71.6% 95.3%
4962916 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 36.0 2.78e-01 70.3% 89.9%
4138337 304.20.1.4 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C 0.53 40.0 3.07e-01 85.1% 34.4%
None — 0.52 38.0 2.83e-01 78.4% 36.4%
3467987 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 41.0 3.63e-01 87.8% 75.5%
4287508 241.1.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT 0.51 35.0 2.91e-01 71.6% 76.9%
5018614 304.8.1.17 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › A9CJY8-like_N 0.50 33.0 3.73e-01 77.0% 90.9%
D3 medium residues 274-426
PDB
Domain cluster: rep: DBP__YP_009162599__Skunk_adenovirus_PB1__1641642__D183-206_246-418
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03728.19 best Viral_DNA_Zn_bi 86.3 2.50e-24 68.0% 98.0%