DNA-dependent_RNA_polymerase_II_largest_subunit

Euk-Vir

Bohle_iridovirus

DNA-dependent_RNA_polymerase_II_largest_subunit__YP_009506668__Bohle_iridovirus__100220

Identity

76.8 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Ranavirus› Bohle_iridovirus

TaxID: 100220

View cluster (11 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 518-634

PDB

Domain cluster: rep: putative_DNA_directed_RNA_polymerase_largest_subunit__YP_009052394__Aureococcus_anophagefferens_virus__1474867__D487-612

D2 medium residues 16-85_176-259

PDB

Domain cluster: rep: putative_RNA_polymerase_largest_subunit__YP_009001703__Anomala_cuprea_entomopoxvirus__62099__D13-74_212-273

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04997.18 best	RNA_pol_Rpb1_1	55.1	1.10e-14	46.1%	23.4%

D3 medium residues 297-330_430-504

PDB

Domain cluster: rep: DNA-dependent_RNA_polymerase_subunit_rpo147__YP_232980__Vaccinia_virus__10245__D277-311_370-443

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00623.26 best	RNA_pol_Rpb1_2	97.4	1.60e-27	65.1%	41.6%
PF00623.26	RNA_pol_Rpb1_2	29.2	1.40e-06	33.0%	20.5%

D4 medium residues 641-788

PDB

Domain cluster: rep: IMGVR_UViG_3300026526_001751-3300026526-Ga0256869_10341511__D627-809

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05000.23 best	RNA_pol_Rpb1_4	47.8	1.70e-12	82.4%	70.1%

D5 medium residues 789-831_939-990_1162-1248

PDB

D6 medium residues 832-938

PDB

Domain cluster: rep: DNA-dependent_RNA_polymerase_II_largest_subunit__YP_009272718__Ranavirus_maximus__1887314__D831-935

D7 medium residues 994-1147

PDB

Domain cluster: rep: DNA-dependent_RNA_polymerase_II_largest_subunit__YP_009272718__Ranavirus_maximus__1887314__D989-1130