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DNA-dependent_RNA_polymerase_subunit_rpo132
Euk-VirVaccinia_virus
DNA-dependent_RNA_polymerase_subunit_rpo132__YP_233026__Vaccinia_virus__10245
Identity
- Accession:
- YP_233026 ↗
- Protein ID:
- DNA-dependent_RNA_polymerase_subunit_rpo132
- Kingdom:
- euk
Quality
73.1
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Orthopoxvirus›
Orthopoxvirus_vaccinia
TaxID: 10245
Cluster
View cluster (58 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 179-342
Domain cluster:
rep: DNA-directed_RNA_polymerase_subunit_beta__YP_009162498__Salmon_gill_poxvirus__1680908__D173-349
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12415.15 best | rpo132 | 67.6 | 6.00e-19 | 19.5% | 100.0% |
D2
high
residues 688-771_877-1022
Domain cluster:
rep: KU935715.1__AND75470.1__ME3_309__00309__D264-326_420-534
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00562.34 best | RNA_pol_Rpb2_6 | 94.6 | 9.80e-27 | 64.3% | 34.1% |
| PF00562.34 | RNA_pol_Rpb2_6 | 48.5 | 1.00e-12 | 36.5% | 21.4% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfB06 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.86 | 77.0 | 7.86e-01 | 100.0% | 94.2% |
| 1hqmC01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.78 | 65.0 | 6.75e-01 | 85.2% | 98.1% |
| 3hu1A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.74 | 30.0 | 4.76e-01 | 84.3% | 92.7% |
| 1cz4A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.73 | 31.0 | 4.86e-01 | 93.5% | 100.0% |
| 2ki8A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.60 | 31.0 | 4.13e-01 | 88.3% | 90.4% |
| 2vpzA05 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.57 | 33.0 | 3.97e-01 | 85.2% | 83.6% |
| 1h0hA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.56 | 33.0 | 3.80e-01 | 83.9% | 76.1% |
| 1dmrA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.54 | 33.0 | 3.87e-01 | 86.1% | 84.0% |
| 1ti2A04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.54 | 34.0 | 4.08e-01 | 84.8% | 93.5% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946077 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.93 | 64.0 | 7.76e-01 | 79.1% | 100.0% |
| 4118150 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.92 | 65.0 | 7.77e-01 | 86.1% | 100.0% |
| 3600872 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.91 | 64.0 | 7.65e-01 | 79.1% | 100.0% |
| 3613807 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.90 | 66.0 | 7.66e-01 | 80.4% | 98.9% |
| 4888118 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.89 | 59.0 | 7.17e-01 | 77.0% | 96.2% |
| 4902571 | 1.1.2.32 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6, RNA_pol_Rpb2_7 | 0.89 | 59.0 | 7.16e-01 | 77.0% | 96.2% |
| 3677222 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.89 | 57.0 | 7.21e-01 | 79.6% | 100.0% |
| 4026622 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.88 | 68.0 | 7.65e-01 | 95.2% | 99.4% |
| 4636141 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.87 | 67.0 | 7.59e-01 | 86.1% | 99.4% |
| 4024674 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.84 | 67.0 | 6.79e-01 | 80.4% | 100.0% |
| 4655578 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.81 | 69.0 | 6.93e-01 | 86.5% | 100.0% |
| 4148017 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.81 | 68.0 | 6.99e-01 | 86.1% | 100.0% |
| 4492078 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.81 | 68.0 | 6.60e-01 | 86.5% | 99.6% |
| 4167437 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.80 | 66.0 | 7.21e-01 | 85.7% | 100.0% |
| 4896487 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.80 | 45.0 | 6.08e-01 | 88.7% | 100.0% |
| 4896460 | 1.1.2.32 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6, RNA_pol_Rpb2_7 | 0.79 | 45.0 | 6.07e-01 | 88.7% | 100.0% |
| 5060583 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.78 | 31.0 | 5.13e-01 | 85.2% | 100.0% |
| 5001485 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.77 | 30.0 | 5.06e-01 | 76.5% | 100.0% |
| 4488210 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.77 | 30.0 | 5.07e-01 | 77.4% | 100.0% |
| 5066567 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.77 | 30.0 | 4.76e-01 | 75.7% | 89.5% |
| 4943791 | 1.1.2.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_2 | 0.77 | 30.0 | 5.01e-01 | 76.1% | 100.0% |
| 4097451 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.76 | 30.0 | 5.01e-01 | 84.8% | 100.0% |
| 4986590 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.76 | 30.0 | 5.00e-01 | 77.0% | 100.0% |
| 4979696 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.76 | 30.0 | 4.96e-01 | 76.1% | 100.0% |
| 4954799 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.76 | 32.0 | 4.99e-01 | 93.5% | 96.8% |
| 4970084 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 30.0 | 4.95e-01 | 75.2% | 100.0% |
| 5052052 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.75 | 32.0 | 4.99e-01 | 88.7% | 96.8% |
| 1883479 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.75 | 32.0 | 5.01e-01 | 87.8% | 100.0% |
| 3486347 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 32.0 | 5.01e-01 | 93.9% | 98.9% |
| 4921633 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.74 | 64.0 | 6.84e-01 | 92.6% | 100.0% |
| 4995354 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 29.0 | 4.85e-01 | 76.1% | 100.0% |
| 4607187 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 31.0 | 4.90e-01 | 83.9% | 96.8% |
| 4024752 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.73 | 31.0 | 4.64e-01 | 87.0% | 90.0% |
| 4039119 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.73 | 66.0 | 6.44e-01 | 93.5% | 100.0% |
| 4027677 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.73 | 29.0 | 4.77e-01 | 86.5% | 100.0% |
| 3409396 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.73 | 31.0 | 4.54e-01 | 84.8% | 86.7% |
| 3169042 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.73 | 30.0 | 4.62e-01 | 76.1% | 90.0% |
| 31 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.73 | 31.0 | 4.86e-01 | 96.5% | 100.0% |
| 3824979 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.73 | 30.0 | 4.85e-01 | 94.3% | 100.0% |
| 5074498 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.73 | 34.0 | 4.69e-01 | 93.9% | 87.0% |
| 3611762 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.72 | 31.0 | 4.84e-01 | 91.7% | 97.9% |
| 3783660 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.72 | 31.0 | 4.66e-01 | 86.5% | 93.0% |
| 3748306 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.71 | 31.0 | 4.79e-01 | 85.7% | 100.0% |
| 4948370 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.56 | 32.0 | 4.11e-01 | 87.0% | 93.5% |
D3
high
residues 1065-1133
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfB08 | 3.90.1800.10 | Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain | 0.72 | 58.0 | 5.37e-01 | 85.5% | 69.4% |
| 1idjA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.55 | 43.0 | 2.81e-01 | 89.9% | 46.2% |
| 5k9aA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.53 | 38.0 | 2.82e-01 | 79.7% | 68.4% |
| 2wuqB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 41.0 | 2.89e-01 | 100.0% | 98.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5054775 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.81 | 64.0 | 5.21e-01 | 85.5% | 48.3% |
| 2773892 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.80 | 64.0 | 5.01e-01 | 87.0% | 44.4% |
| 5070342 | 4043.1.1.2 ↗ | a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 | 0.76 | 60.0 | 5.50e-01 | 85.5% | 66.7% |
| 5017094 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 44.0 | 4.83e-01 | 73.9% | 81.8% |
| 3624443 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.66 | 46.0 | 2.84e-01 | 72.5% | 27.7% |
| 5058144 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 45.0 | 3.54e-01 | 82.6% | 47.1% |
| 5016164 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 43.0 | 3.40e-01 | 82.6% | 46.2% |
| 3849943 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.54 | 38.0 | 3.10e-01 | 76.8% | 60.0% |
| 3586126 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.53 | 36.0 | 3.04e-01 | 71.0% | 40.8% |
| 3397821 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 45.0 | 3.29e-01 | 94.2% | 85.8% |
| 3509575 | 2003.1.5.42 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 | 0.53 | 46.0 | 3.11e-01 | 100.0% | 56.8% |
| 3475306 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.53 | 36.0 | 3.11e-01 | 71.0% | 46.4% |
| 3442989 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.52 | 45.0 | 3.48e-01 | 100.0% | 75.9% |
| 3277569 | 3087.1.1.1 ↗ | few secondary structure elements › CDGSH iron-sulfur domains › CDGSH iron-sulfur domains › Type 1 and 2 › zf-CDGSH | 0.52 | 38.0 | 3.57e-01 | 79.7% | 62.9% |
| 5057111 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.52 | 43.0 | 3.39e-01 | 91.3% | 82.8% |
| 5078764 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 44.0 | 3.74e-01 | 97.1% | 75.0% |
| 5061487 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.51 | 42.0 | 3.48e-01 | 95.7% | 79.7% |
D4
medium
residues 52-140
D5
medium
residues 495-585
Domain cluster:
rep: DNA-directed_RNA_polymerase_subunit_beta__YP_003406778__Marseillevirus_marseillevirus__694581__D519-604
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfB05 | 3.90.1070.20 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.83 | 71.0 | 7.53e-01 | 95.6% | 100.0% |
| 2pmzB05 | 3.90.1070.20 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.79 | 66.0 | 7.00e-01 | 95.6% | 100.0% |
| 6ruiB05 | 3.90.1070.20 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.79 | 72.0 | 7.19e-01 | 96.7% | 100.0% |
| 1n6zA00 | 3.10.20.250 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › YML108W-like | 0.64 | 45.0 | 4.30e-01 | 72.5% | 84.8% |
| 1ze3D00 | 3.10.20.410 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain | 0.62 | 43.0 | 3.91e-01 | 71.4% | 74.1% |
| 6j09A02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 44.0 | 4.73e-01 | 96.7% | 89.7% |
| 3eoqB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.61 | 49.0 | 3.96e-01 | 89.0% | 85.8% |
| 5uayA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 45.0 | 4.74e-01 | 98.9% | 88.0% |
| 6wimA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 41.0 | 4.46e-01 | 94.5% | 85.1% |
| 4k3bA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 44.0 | 4.61e-01 | 96.7% | 84.5% |
| 4k3bA05 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.60 | 41.0 | 4.34e-01 | 96.7% | 82.3% |
| 2qdfA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.59 | 43.0 | 4.49e-01 | 96.7% | 85.5% |
| 3l4jA04 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.59 | 40.0 | 3.93e-01 | 73.6% | 63.7% |
| 3racA00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 50.0 | 3.47e-01 | 97.8% | 90.6% |
| 7l9pK01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.58 | 36.0 | 3.39e-01 | 73.6% | 47.9% |
| 3ungC03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.58 | 48.0 | 4.29e-01 | 93.4% | 68.4% |
| 1o57A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 41.0 | 4.51e-01 | 74.7% | 93.1% |
| 1kutB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 37.0 | 3.82e-01 | 71.4% | 75.3% |
| 2r7cA02 | 3.30.428.20 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain | 0.54 | 39.0 | 3.24e-01 | 74.7% | 65.6% |
| 2x8xX02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.54 | 37.0 | 4.00e-01 | 92.3% | 86.8% |
| 1qz9A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 44.0 | 3.84e-01 | 100.0% | 58.0% |
| 1vx7X00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.53 | 45.0 | 4.48e-01 | 98.9% | 91.8% |
| 5dm6S01 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.53 | 39.0 | 3.98e-01 | 78.0% | 100.0% |
| 1aw7A01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 37.0 | 3.43e-01 | 79.1% | 90.2% |
| 7dg2C01 | 1.10.10.1200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif | 0.50 | 35.0 | 3.76e-01 | 81.3% | 88.0% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4980642 | 4961.1.1.0 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit | 0.86 | 69.0 | 7.55e-01 | 85.7% | 100.0% |
| 3303495 | 4961.1.1.2 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4 | 0.86 | 79.0 | 7.34e-01 | 96.7% | 94.5% |
| 3258891 | 4961.1.1.2 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4 | 0.85 | 79.0 | 7.34e-01 | 98.9% | 94.5% |
| 3491435 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.85 | 73.0 | 7.61e-01 | 98.9% | 97.6% |
| 4994086 | 4961.1.1.0 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit | 0.84 | 73.0 | 7.58e-01 | 98.9% | 97.6% |
| 3654329 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.84 | 75.0 | 7.59e-01 | 100.0% | 94.4% |
| 4024672 | 4961.1.1.0 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit | 0.83 | 76.0 | 7.34e-01 | 96.7% | 99.0% |
| 5073048 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.83 | 74.0 | 7.51e-01 | 100.0% | 95.6% |
| 3492372 | 4961.1.1.2 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4 | 0.83 | 77.0 | 7.21e-01 | 100.0% | 96.4% |
| 4979469 | 4961.1.1.0 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit | 0.82 | 74.0 | 7.48e-01 | 100.0% | 95.6% |
| 3335720 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.82 | 73.0 | 7.43e-01 | 96.7% | 94.4% |
| 4956726 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.82 | 72.0 | 7.51e-01 | 98.9% | 98.8% |
| 3401629 | 4961.1.1.2 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4 | 0.82 | 78.0 | 7.52e-01 | 100.0% | 95.0% |
| 3922689 | 4961.1.1.2 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4 | 0.82 | 78.0 | 7.52e-01 | 100.0% | 97.0% |
| 3610294 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.82 | 72.0 | 7.31e-01 | 97.8% | 94.4% |
| 4935989 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.82 | 74.0 | 7.48e-01 | 100.0% | 96.7% |
| 4150637 | 4961.1.1.2 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4 | 0.82 | 77.0 | 7.14e-01 | 100.0% | 96.4% |
| 4932691 | 4961.1.1.0 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit | 0.82 | 71.0 | 7.34e-01 | 97.8% | 97.6% |
| 3575675 | 4961.1.1.2 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4 | 0.81 | 77.0 | 7.15e-01 | 100.0% | 91.8% |
| 3231491 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.81 | 74.0 | 7.35e-01 | 100.0% | 92.6% |
| 3517397 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.81 | 72.0 | 7.51e-01 | 96.7% | 100.0% |
| 3721265 | 4961.1.1.2 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4 | 0.81 | 75.0 | 7.38e-01 | 97.8% | 95.8% |
| 3637895 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.81 | 75.0 | 7.41e-01 | 100.0% | 93.7% |
| 3513013 | 4961.1.1.2 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4 | 0.81 | 77.0 | 7.58e-01 | 100.0% | 96.8% |
| 4927222 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.81 | 76.0 | 7.55e-01 | 100.0% | 95.8% |
| 4939951 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.81 | 76.0 | 7.51e-01 | 100.0% | 96.8% |
| 4948672 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.80 | 69.0 | 5.78e-01 | 98.9% | 57.3% |
| 5000299 | 4961.1.1.0 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit | 0.80 | 74.0 | 7.45e-01 | 98.9% | 98.9% |
| 2700177 | 4961.1.1.2 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4 | 0.80 | 74.0 | 6.96e-01 | 98.9% | 96.3% |
| 5037577 | 4961.1.1.1 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 | 0.80 | 73.0 | 7.20e-01 | 96.7% | 97.9% |
| 5059475 | 4961.1.1.0 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit | 0.79 | 70.0 | 7.22e-01 | 96.7% | 100.0% |
| 5026627 | 4961.1.1.0 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit | 0.78 | 58.0 | 5.65e-01 | 78.0% | 97.0% |
| 3718109 | 4961.1.1.2 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4 | 0.77 | 70.0 | 6.34e-01 | 97.8% | 95.8% |
| 3608066 | 4961.1.1.0 ↗ | a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit | 0.75 | 68.0 | 6.13e-01 | 97.8% | 95.8% |
| 5745 | 870.1.1.1 ↗ | a+b two layers › Hypothetical protein Yml108w › Hypothetical protein Yml108w › Hypothetical protein Yml108w › DUF1892 | 0.64 | 45.0 | 4.30e-01 | 72.5% | 84.8% |
| 5041788 | 3715.1.1.0 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e | 0.62 | 50.0 | 5.03e-01 | 94.5% | 88.9% |
| 5074512 | 3715.1.1.0 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e | 0.62 | 49.0 | 4.82e-01 | 96.7% | 80.0% |
| 3575511 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.61 | 44.0 | 4.37e-01 | 98.9% | 72.6% |
| 3520104 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.61 | 43.0 | 4.60e-01 | 96.7% | 85.0% |
| 2547933 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.59 | 45.0 | 4.63e-01 | 97.8% | 87.1% |
| 4354750 | 3121.1.1.3 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_2 | 0.59 | 39.0 | 4.22e-01 | 95.6% | 81.3% |
| 4115098 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.59 | 43.0 | 4.48e-01 | 96.7% | 83.5% |
| 3511708 | 859.1.1.1 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA | 0.59 | 42.0 | 3.18e-01 | 74.7% | 31.2% |
| 4258146 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.56 | 39.0 | 4.14e-01 | 98.9% | 85.0% |
| 4980887 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 43.0 | 4.18e-01 | 93.4% | 77.0% |
| 3969393 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.54 | 38.0 | 4.04e-01 | 97.8% | 85.0% |
| 3968822 | 3121.1.1.3 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_2 | 0.54 | 38.0 | 4.04e-01 | 97.8% | 85.0% |
| 3733384 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 47.0 | 2.93e-01 | 97.8% | 38.5% |
| 2106287 | 3715.1.1.1 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e | 0.53 | 44.0 | 4.37e-01 | 97.8% | 89.7% |
| 4026828 | 859.1.1.0 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 | 0.52 | 36.0 | 2.94e-01 | 73.6% | 48.4% |
| 5013701 | 3572.1.1.2 ↗ | a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 | 0.52 | 40.0 | 3.83e-01 | 82.4% | 85.7% |
| 3998502 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.51 | 32.0 | 3.43e-01 | 74.7% | 73.8% |
| 3933686 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.50 | 41.0 | 2.85e-01 | 96.7% | 26.6% |