←Back to structures

DNA-dependent_RNA_polymerase_subunit_rpo147

Euk-Vir

Monkeypox_virus

DNA-dependent_RNA_polymerase_subunit_rpo147__YP_010377087__Monkeypox_virus__10244

Identity

Accession:: YP_010377087 ↗
Protein ID:: DNA-dependent_RNA_polymerase_subunit_rpo147
Kingdom:: euk

Quality

71.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Orthopoxvirus› Monkeypox_virus

TaxID: 10244

Cluster

View cluster (32 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-74_190-250

PDB

Domain cluster: rep: putative_RNA_polymerase_largest_subunit__YP_009001703__Anomala_cuprea_entomopoxvirus__62099__D13-74_212-273

D2 high residues 460-572

PDB

Domain cluster: rep: RNA_polymerase__YP_010085368__Eastern_grey_kangaroopox_virus__2042482__D459-574

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04983.24 best	RNA_pol_Rpb1_3	33.5	5.20e-08	100.0%	84.0%

D3 high residues 578-740

PDB

Domain cluster: rep: DNA-directed_RNA_polymerase_147_kDa_polypeptide__YP_009329703__BeAn_58058_virus__67082__D598-725

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05000.23 best	RNA_pol_Rpb1_4	62.1	6.00e-17	66.9%	85.0%

D4 medium residues 76-189

PDB

Domain cluster: rep: DNA-directed_RNA_polymerase_II_largest_subunit__YP_010084808__Shrimp_hemocyte_iridescent_virus__2039780__D81-188

D5 medium residues 283-304_371-446

PDB

Domain cluster: rep: DNA-dependent_RNA_polymerase_subunit_rpo147__YP_232980__Vaccinia_virus__10245__D277-311_370-443

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00623.26 best	RNA_pol_Rpb1_2	50.9	3.10e-13	71.4%	39.2%

D6 medium residues 305-370

PDB

Domain cluster: rep: RNA_polymerase_subunit_RPO147__YP_009046131__Penguinpox_virus__648998__D309-369

D7 medium residues 741-770_926-950

PDB

D8 medium residues 771-925

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4kjmB01	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.69	22.0	3.42e-01	83.9%	68.3%
6jlzA01	1.20.120.1070	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain	0.52	30.0	3.49e-01	78.1%	79.6%
3o3mB01	1.20.1270.370	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.51	32.0	3.79e-01	85.2%	94.2%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4887311	4957.1.1.0 ↗	a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit	0.91	72.0	8.06e-01	86.5%	100.0%
3923539	101.1.10.1 ↗	alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N	0.58	35.0	3.69e-01	78.7%	64.1%
None	—		0.50	36.0	3.43e-01	72.3%	96.8%

D9 medium residues 951-979_1143-1206

PDB

D10 medium residues 998-1088

PDB

Domain cluster: rep: putative_RNA_polymerase_largest_subunit__YP_009001703__Anomala_cuprea_entomopoxvirus__62099__D1033-1131