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DNA-dependent_RNA_polymerase_subunit_rpo147

Euk-Vir

Vaccinia_virus

DNA-dependent_RNA_polymerase_subunit_rpo147__YP_232980__Vaccinia_virus__10245

Identity

Accession:
YP_232980 ↗
Protein ID:
DNA-dependent_RNA_polymerase_subunit_rpo147
Kingdom:
euk

Quality

71.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Orthopoxvirus› Orthopoxvirus_vaccinia

TaxID: 10245

Cluster

View cluster (32 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-72_192-257
PDB
Domain cluster: rep: putative_RNA_polymerase_largest_subunit__YP_009001703__Anomala_cuprea_entomopoxvirus__62099__D13-74_212-273
D2 high residues 75-189
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_II_largest_subunit__YP_010084808__Shrimp_hemocyte_iridescent_virus__2039780__D81-188
D3 high residues 277-311_370-443
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00623.26 best RNA_pol_Rpb1_2 50.6 3.70e-13 67.9% 42.2%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfA03 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.96 86.0 8.94e-01 93.6% 99.0%
1ynjD04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.94 86.0 7.67e-01 95.4% 100.0%
7eu1A01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.91 87.0 7.81e-01 100.0% 91.5%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.82 64.0 6.83e-01 87.2% 92.7%
3ougA00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.78 60.0 6.12e-01 82.6% 82.1%
1yleA02 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.78 46.0 5.82e-01 78.0% 100.0%
1cz4A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.77 61.0 6.63e-01 86.2% 97.8%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.77 60.0 6.23e-01 82.6% 98.1%
7xc8A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.74 54.0 5.38e-01 76.1% 100.0%
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.73 54.0 5.84e-01 77.1% 100.0%
4jcwA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.72 56.0 5.78e-01 81.7% 100.0%
2ki8A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.71 63.0 6.04e-01 94.5% 94.4%
2kqaA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.68 57.0 5.58e-01 89.9% 100.0%
1mvpA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.63 46.0 4.55e-01 74.3% 85.7%
6dgiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.63 39.0 4.78e-01 78.9% 100.0%
3s8iA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.63 45.0 4.37e-01 75.2% 92.7%
4grhA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.55 38.0 2.61e-01 71.6% 84.0%
ECOD (94)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4948679 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.96 87.0 5.87e-01 92.7% 50.3%
5058903 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.96 89.0 7.10e-01 95.4% 90.5%
3836120 275.1.1.1 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.96 89.0 7.01e-01 95.4% 94.9%
5081033 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.95 90.0 7.09e-01 98.2% 87.5%
4026183 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.95 87.0 7.65e-01 95.4% 94.0%
3966248 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.95 86.0 8.47e-01 97.2% 89.6%
3698542 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.94 90.0 6.98e-01 98.2% 90.2%
3684523 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.94 89.0 8.44e-01 98.2% 87.2%
3374701 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.94 89.0 7.27e-01 98.2% 90.0%
3596090 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.94 90.0 8.71e-01 100.0% 92.5%
3670775 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.93 90.0 8.68e-01 100.0% 91.7%
3509068 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.93 90.0 7.07e-01 100.0% 91.5%
4015760 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.93 90.0 7.11e-01 100.0% 94.4%
4943460 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.93 90.0 7.24e-01 100.0% 92.4%
3360997 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.92 89.0 7.89e-01 100.0% 88.3%
4556003 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.92 65.0 7.50e-01 78.0% 95.2%
4886549 275.1.1.1 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.91 88.0 7.60e-01 100.0% 93.5%
4129914 1.1.2.31 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 0.91 88.0 6.74e-01 100.0% 67.0%
1746098 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.91 87.0 7.33e-01 100.0% 89.9%
4890084 1.1.2.31 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 0.90 83.0 7.91e-01 95.4% 85.2%
2886100 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.88 83.0 6.67e-01 100.0% 81.4%
2968637 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.86 76.0 6.43e-01 92.7% 89.2%
3486347 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.84 66.0 7.09e-01 85.3% 93.7%
4887355 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.84 77.0 7.36e-01 99.1% 84.7%
5011232 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.83 59.0 6.84e-01 78.0% 100.0%
3706161 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.83 62.0 7.01e-01 86.2% 100.0%
3409396 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.83 65.0 6.66e-01 89.0% 84.8%
4607187 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.82 65.0 6.94e-01 83.5% 93.7%
5060218 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.82 61.0 6.80e-01 76.1% 100.0%
5076635 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.82 62.0 6.96e-01 82.6% 100.0%
3602941 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.82 62.0 6.93e-01 82.6% 100.0%
5041263 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 61.0 6.89e-01 81.7% 100.0%
4970875 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 61.0 6.83e-01 81.7% 100.0%
4024752 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 64.0 6.65e-01 88.1% 89.0%
3611762 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.81 63.0 6.71e-01 81.7% 92.6%
4931749 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 61.0 6.83e-01 81.7% 100.0%
5053172 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 61.0 6.78e-01 83.5% 100.0%
5045002 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.81 61.0 6.72e-01 82.6% 95.6%
3696793 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.81 69.0 6.81e-01 90.8% 100.0%
5074983 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 63.0 6.90e-01 86.2% 100.0%
4938514 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 61.0 6.82e-01 80.7% 100.0%
4977163 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 62.0 6.85e-01 83.5% 100.0%
5060583 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.80 60.0 6.76e-01 79.8% 100.0%
4991006 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.80 60.0 6.72e-01 83.5% 100.0%
4967302 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 63.0 6.88e-01 85.3% 100.0%
3343851 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 70.0 5.38e-01 93.6% 77.7%
5069203 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.79 62.0 6.83e-01 87.2% 100.0%
4263053 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 59.0 6.59e-01 81.7% 100.0%
4122334 1.1.2.6 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.78 61.0 5.53e-01 82.6% 62.9%
3973129 1.13.1.0 ↗ beta barrels › cradle loop barrel › Arginine N-succinyltransferase alpha chain C-terminal domain › Arginine N-succinyltransferase alpha chain C-terminal domain 0.78 48.0 5.99e-01 79.8% 100.0%
3684407 1.1.2.35 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF26429 0.78 69.0 5.94e-01 94.5% 99.4%
3605376 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.78 63.0 6.70e-01 83.5% 100.0%
4346976 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 59.0 6.56e-01 83.5% 100.0%
4027672 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.78 64.0 6.51e-01 85.3% 91.4%
4245831 1.1.2.6 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.78 60.0 5.49e-01 82.6% 62.9%
1141837 1.13.1.2 ↗ beta barrels › cradle loop barrel › Arginine N-succinyltransferase alpha chain C-terminal domain › Arginine N-succinyltransferase alpha chain C-terminal domain › PF29831 0.78 47.0 5.88e-01 78.9% 100.0%
5053174 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.78 59.0 6.47e-01 84.4% 96.7%
5074498 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.77 65.0 6.38e-01 90.8% 83.5%
4021338 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 63.0 6.58e-01 85.3% 99.0%
5053173 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 63.0 6.67e-01 85.3% 97.9%
3748306 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 63.0 6.74e-01 85.3% 100.0%
3597196 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 63.0 6.71e-01 85.3% 100.0%
3927447 1.1.2.8 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › UFD1 0.77 62.0 6.27e-01 85.3% 92.7%
4013955 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.77 63.0 5.97e-01 86.2% 100.0%
5060748 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.76 68.0 6.80e-01 94.5% 99.1%
4498374 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.76 69.0 5.18e-01 97.2% 68.4%
3643011 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.76 65.0 6.13e-01 91.7% 99.2%
4863286 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.75 57.0 6.31e-01 87.2% 100.0%
5030460 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.75 69.0 4.40e-01 98.2% 37.1%
4961166 1.1.2.23 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_cat 0.75 69.0 5.21e-01 98.2% 74.3%
5056546 3349.1.1.3 ↗ a+b two layers › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › DNA polymerase D large subunit DP2 N-terminal domain › PolC_DP2_cat 0.75 69.0 4.41e-01 98.2% 38.3%
31 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.75 60.0 6.49e-01 89.9% 100.0%
5076079 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 54.0 5.31e-01 74.3% 95.7%
4487888 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 54.0 5.76e-01 75.2% 100.0%
3274137 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.75 67.0 6.43e-01 97.2% 97.6%
4948370 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.75 66.0 6.08e-01 94.5% 98.6%
3722909 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.74 67.0 6.23e-01 97.2% 100.0%
4280405 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 58.0 6.32e-01 81.7% 100.0%
4013442 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 55.0 6.18e-01 80.7% 100.0%
3406944 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.74 61.0 5.54e-01 87.2% 80.0%
5077014 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.73 52.0 5.08e-01 73.4% 92.5%
4508340 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.73 61.0 6.25e-01 89.0% 91.4%
5066756 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.72 52.0 4.83e-01 74.3% 94.8%
4370157 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.72 62.0 5.64e-01 91.7% 85.3%
4173603 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 55.0 5.95e-01 82.6% 100.0%
3010131 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.69 58.0 5.89e-01 89.0% 99.1%
3277741 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.69 58.0 5.69e-01 89.0% 91.3%
4441475 1.1.2.12 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PTAC 0.69 55.0 5.74e-01 85.3% 92.0%
4048983 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 56.0 5.75e-01 87.2% 100.0%
4934824 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.69 51.0 5.60e-01 78.0% 98.8%
3772228 1.1.2.40 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_vert_N 0.68 59.0 5.53e-01 92.7% 95.4%
3701559 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.65 53.0 5.15e-01 87.2% 96.7%
4927010 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.63 49.0 4.72e-01 83.5% 93.6%
3974016 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.57 52.0 4.81e-01 97.2% 82.2%
D4 high residues 460-572
PDB
Domain cluster: rep: RNA_polymerase__YP_010085368__Eastern_grey_kangaroopox_virus__2042482__D459-574
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04983.24 best RNA_pol_Rpb1_3 33.5 5.20e-08 100.0% 84.0%
D5 medium residues 579-674
PDB
Domain cluster: rep: RNA_polymerase__YP_010085368__Eastern_grey_kangaroopox_virus__2042482__D580-658
D6 medium residues 675-734
PDB
D7 medium residues 735-788
PDB
D8 medium residues 839-900
PDB
Domain cluster: rep: RNA_polymerase_subunit_RPO147_protein__YP_009143406__Raccoonpox_virus__10256__D846-917
D9 medium residues 1000-1089
PDB
Domain cluster: rep: putative_RNA_polymerase_largest_subunit__YP_009001703__Anomala_cuprea_entomopoxvirus__62099__D1033-1131
D10 medium residues 1230-1286
PDB