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DNA-dependent_RNA_polymerase_subunit_rpo19
Euk-VirSalmon_gill_poxvirus
DNA-dependent_RNA_polymerase_subunit_rpo19__YP_009162475__Salmon_gill_poxvirus__1680908
Identity
- Accession:
- YP_009162475 ↗
- Protein ID:
- DNA-dependent_RNA_polymerase_subunit_rpo19
- Kingdom:
- euk
Quality
70.9
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Salmonpoxvirus›
Salmon_gill_poxvirus
TaxID: 1680908
Cluster
View cluster (14 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 69-178
Domain cluster:
rep: RNA_polymerase__YP_009480632__Sea_otter_poxvirus__1416741__D85-166
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05320.18 best | Pox_RNA_Pol_19 | 55.1 | 1.30e-14 | 89.1% | 56.6% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ku3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 33.0 | 4.19e-01 | 77.3% | 85.2% |
| 2kbwA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.64 | 43.0 | 3.80e-01 | 91.8% | 49.0% |
| 3oxfA05 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 32.0 | 3.75e-01 | 87.3% | 78.7% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 33.0 | 3.52e-01 | 79.1% | 64.2% |
| 7f0aA01 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.56 | 49.0 | 4.17e-01 | 96.4% | 88.5% |
| 6tqpA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.56 | 39.0 | 3.69e-01 | 91.8% | 58.1% |
| 2bgcA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 35.0 | 3.65e-01 | 83.6% | 67.3% |
| 3zcoA00 | 1.10.10.2450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 43.0 | 4.19e-01 | 88.2% | 74.8% |
| 3swhA01 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.54 | 47.0 | 4.19e-01 | 99.1% | 75.8% |
| 7dwqL01 | 1.20.1240.10 | Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI | 0.53 | 38.0 | 3.71e-01 | 74.5% | 88.0% |
| 1z21A00 | 1.10.10.1000 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain | 0.52 | 40.0 | 4.25e-01 | 97.3% | 95.8% |
| 1omsA00 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.51 | 39.0 | 3.91e-01 | 80.9% | 87.7% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946274 | 152.1.1.0 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 | 0.81 | 56.0 | 6.48e-01 | 70.9% | 100.0% |
| 5022794 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 42.0 | 4.56e-01 | 79.1% | 83.3% |
| 3848560 | 109.4.1.1226 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_KNTC1_3rd | 0.61 | 42.0 | 2.92e-01 | 100.0% | 21.1% |
| 3505456 | 5067.1.1.16 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MgtC | 0.58 | 40.0 | 3.67e-01 | 70.0% | 82.1% |
| 1855792 | 109.4.1.151 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup188_N,Nup188_N-subdom_III | 0.54 | 39.0 | 2.62e-01 | 77.3% | 89.3% |
| 4610045 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.52 | 40.0 | 3.31e-01 | 80.9% | 53.3% |
| 3579069 | 109.4.1.213 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FancD2 | 0.52 | 46.0 | 3.00e-01 | 100.0% | 25.7% |
| 3509165 | 101.43.1.0 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain | 0.52 | 34.0 | 3.60e-01 | 91.8% | 75.8% |
| 3924045 | 102.1.3.9 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › DZF_C | 0.52 | 39.0 | 3.68e-01 | 80.0% | 66.2% |
| 3257830 | 102.1.3.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain | 0.51 | 40.0 | 3.57e-01 | 81.8% | 74.8% |