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DNA-directed_RNA_polymerase_II

Euk-Vir

Heliothis_virescens_ascovirus_3f

DNA-directed_RNA_polymerase_II__YP_009701529__Heliothis_virescens_ascovirus_3f__328614

Identity

Accession:
YP_009701529 ↗
Protein ID:
DNA-directed_RNA_polymerase_II
Kingdom:
euk

Quality

79.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Ascoviridae› Ascovirus› Heliothis_virescens_ascovirus_3f

TaxID: 328614

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 20-135
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04563.21 best RNA_pol_Rpb2_1 37.2 3.30e-09 98.3% 59.6%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 41.0 4.23e-01 76.7% 61.3%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 39.0 4.15e-01 72.4% 69.9%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 33.0 3.16e-01 72.4% 43.0%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.58 42.0 3.65e-01 76.7% 57.2%
1ss4A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 30.0 2.82e-01 72.4% 40.9%
5hccB03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 38.0 3.84e-01 75.9% 90.1%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.52 30.0 3.65e-01 74.1% 95.4%
2b39A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.77e-01 77.6% 85.6%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.80e-01 79.3% 85.8%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 37.0 3.32e-01 75.9% 68.3%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937697 4010.1.1.1 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 0.96 93.0 6.61e-01 100.0% 43.4%
5026625 4010.1.1.0 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase 0.96 92.0 6.46e-01 100.0% 43.2%
5059473 4010.1.1.0 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase 0.95 91.0 6.36e-01 100.0% 49.5%
4865083 4010.1.1.2 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 0.94 80.0 7.37e-01 87.9% 80.3%
4946072 4010.1.1.1 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 0.94 90.0 6.37e-01 100.0% 43.0%
4956724 4010.1.1.1 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 0.93 89.0 6.35e-01 100.0% 41.4%
3824946 4010.1.1.2 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 0.93 89.0 6.20e-01 100.0% 39.7%
5009207 4010.1.1.1 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 0.93 89.0 6.10e-01 100.0% 50.0%
3515716 4010.1.1.2 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 0.91 87.0 6.25e-01 100.0% 41.7%
3509883 4010.1.1.1 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 0.90 86.0 6.11e-01 100.0% 40.3%
3033318 4010.1.1.2 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 0.90 86.0 7.08e-01 100.0% 73.7%
4818389 4010.1.1.2 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 0.88 74.0 6.28e-01 87.1% 62.5%
1108092 4010.1.1.0 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase 0.88 83.0 6.80e-01 100.0% 72.1%
4029039 4010.1.1.2 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 0.88 83.0 5.54e-01 100.0% 35.1%
5004672 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.64 36.0 3.62e-01 75.9% 53.3%
3712993 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 33.0 3.98e-01 76.7% 84.0%
3596299 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 41.0 4.27e-01 83.6% 84.8%
4024178 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 40.0 2.73e-01 75.9% 38.7%
3581448 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 35.0 3.53e-01 75.0% 63.5%
5051723 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 4.54e-01 99.1% 94.3%
3902618 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 31.0 3.32e-01 78.4% 65.7%
3937491 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.72e-01 79.3% 81.5%
3625834 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 34.0 3.76e-01 76.7% 84.2%
3517477 2484.1.1.230 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 0.51 36.0 3.77e-01 72.4% 81.0%
3260956 11.1.5.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › STATa_Ig 0.51 39.0 3.95e-01 95.7% 81.7%
4010500 7503.1.1.24 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › PF25851 0.51 36.0 3.37e-01 75.0% 76.6%
D2 medium residues 136-179_391-525
PDB
Domain cluster: rep: RNA_polymerase_subunit_RPO132__YP_009177160__Turkeypox_virus__336486__D16-42_128-166_348-436
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04565.22 best RNA_pol_Rpb2_3 29.0 1.40e-06 32.4% 79.4%
D3 medium residues 180-205_217-381
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.67 15.0 2.95e-01 78.5% 64.9%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 17.0 3.00e-01 93.2% 70.3%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 18.0 3.15e-01 94.2% 78.7%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.56 16.0 3.33e-01 85.9% 100.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 14.0 2.50e-01 89.5% 62.9%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 24.0 3.41e-01 74.9% 93.6%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 19.0 3.14e-01 74.3% 97.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4980641 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.67 49.0 5.04e-01 100.0% 77.3%
5066592 1030.1.1.0 ↗ alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 0.64 34.0 4.58e-01 73.8% 97.0%
4958749 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.62 47.0 4.73e-01 100.0% 76.8%
4024671 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.61 47.0 4.84e-01 100.0% 82.8%
5016556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 22.0 3.16e-01 94.2% 68.9%
4994698 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.59 47.0 4.68e-01 100.0% 79.5%
3573585 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 17.0 3.31e-01 94.8% 90.7%
5048895 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.54 17.0 3.09e-01 70.7% 90.0%
3660181 5051.1.1.7 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp 0.53 43.0 3.22e-01 88.0% 84.3%
4188237 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.52 16.0 2.92e-01 85.9% 89.1%
D4 medium residues 526-627
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_subunit_beta__YP_003406778__Marseillevirus_marseillevirus__694581__D519-604
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04566.19 best RNA_pol_Rpb2_4 52.6 5.30e-14 58.8% 95.2%
D5 medium residues 746-793_896-973
PDB
Domain cluster: rep: PHAGE-A8--js4906-27-3_S30_scaffold_1_curated_closed_complete_prodigal-single.1__X__X__00064__D205-229_383-459
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00562.34 best RNA_pol_Rpb2_6 98.7 5.50e-28 61.1% 18.8%
PF00562.34 RNA_pol_Rpb2_6 58.8 7.40e-16 42.9% 13.7%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfB06 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.96 90.0 7.15e-01 100.0% 54.7%
1hqmC01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.86 76.0 6.17e-01 100.0% 53.7%
1qcsA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.72 43.0 5.24e-01 77.0% 92.7%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.65 44.0 4.87e-01 84.1% 90.6%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.56 39.0 4.05e-01 73.0% 87.6%
5c9dB00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.55 40.0 4.12e-01 75.4% 80.0%
1je0C00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.54 42.0 3.51e-01 83.3% 84.1%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3600872 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.97 82.0 7.28e-01 90.5% 65.5%
4946077 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.97 82.0 7.42e-01 91.3% 68.1%
3613807 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.95 85.0 7.37e-01 92.1% 65.7%
4024674 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.94 84.0 6.64e-01 92.1% 51.1%
4026622 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.94 80.0 6.89e-01 92.9% 61.1%
3677222 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.94 69.0 6.44e-01 92.9% 63.3%
4118150 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.92 80.0 7.19e-01 92.9% 68.5%
4039119 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.92 80.0 6.16e-01 92.9% 45.2%
4888118 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.91 71.0 6.46e-01 85.7% 63.1%
4636141 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.91 81.0 7.00e-01 95.2% 64.4%
4902571 1.1.2.32 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6, RNA_pol_Rpb2_7 0.91 71.0 6.43e-01 85.7% 63.1%
4921633 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.90 77.0 6.33e-01 92.9% 54.4%
4167437 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.90 81.0 6.75e-01 92.9% 69.7%
4492078 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.89 81.0 6.18e-01 92.9% 74.8%
4655578 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.89 80.0 6.34e-01 92.9% 72.6%
4148017 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.89 80.0 6.42e-01 92.9% 76.4%
5001485 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.72 44.0 5.20e-01 75.4% 90.6%
4943103 1.1.2.45 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_2 0.70 44.0 5.27e-01 74.6% 94.1%
5052052 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.70 46.0 5.16e-01 77.8% 87.4%
5074498 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.69 46.0 4.80e-01 78.6% 73.9%
3707799 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 41.0 4.85e-01 78.6% 90.6%
3599535 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.67 44.0 5.04e-01 77.8% 93.3%
3391395 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 46.0 5.06e-01 78.6% 90.0%
3273202 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.66 47.0 5.15e-01 78.6% 93.0%
4944655 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.65 48.0 4.76e-01 76.2% 94.8%
3772228 1.1.2.40 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PEX6_vert_N 0.65 46.0 4.58e-01 76.2% 70.0%
4956295 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.65 53.0 5.33e-01 84.9% 97.6%
5077637 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.65 53.0 5.31e-01 86.5% 96.9%
4971088 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 47.0 4.98e-01 76.2% 92.2%
5008491 1.1.2.47 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF27352 0.64 45.0 4.97e-01 77.0% 91.0%
3977068 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 51.0 5.47e-01 88.1% 96.4%
5044689 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 51.0 5.37e-01 84.1% 98.3%
4039425 1.1.2.22 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N_fung 0.63 45.0 4.93e-01 77.0% 89.5%
4996672 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.63 50.0 5.10e-01 84.1% 96.8%
4983491 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.62 48.0 5.20e-01 85.7% 95.2%
5035802 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.62 49.0 5.34e-01 84.1% 99.0%
5079113 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 51.0 5.15e-01 87.3% 99.2%
4944658 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 51.0 5.13e-01 87.3% 96.8%
4992397 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.61 47.0 5.07e-01 84.1% 95.2%
5061959 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 48.0 4.97e-01 82.5% 97.5%
5055390 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 50.0 4.91e-01 86.5% 100.0%
5077136 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 50.0 5.18e-01 87.3% 99.2%
5005269 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 48.0 4.71e-01 84.9% 90.0%
5043595 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.61 49.0 5.11e-01 84.9% 100.0%
3731145 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.60 42.0 4.22e-01 70.6% 76.0%
5069976 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.60 48.0 4.82e-01 84.9% 99.2%
5074622 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.60 51.0 4.96e-01 90.5% 98.6%
5079519 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.60 47.0 4.88e-01 82.5% 93.3%
4992834 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.60 47.0 5.04e-01 84.1% 94.5%
4467934 1.1.2.16 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.60 48.0 4.98e-01 84.1% 96.5%
4972384 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 45.0 4.81e-01 84.1% 91.8%
4339577 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 51.0 5.14e-01 92.9% 95.2%
4989696 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 47.0 4.90e-01 84.1% 97.4%
5028404 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.56 46.0 4.83e-01 85.7% 95.7%
3513377 1.1.1.18 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.56 41.0 4.40e-01 75.4% 93.3%
4246959 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.55 46.0 4.69e-01 90.5% 96.0%
1567466 1.1.2.13 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › 3D 0.52 40.0 3.85e-01 80.2% 69.9%
D6 medium residues 796-894
PDB
Domain cluster: rep: putative_RNA_polymerase_beta_subunit__YP_009052296__Aureococcus_anophagefferens_virus__1474867__D765-873
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00562.34 best RNA_pol_Rpb2_6 25.8 7.90e-06 96.0% 19.6%
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.85 80.0 7.36e-01 100.0% 85.5%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.83 78.0 6.28e-01 100.0% 99.4%
2a6hC06 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.82 76.0 6.85e-01 100.0% 97.0%
6ruiB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.81 77.0 6.99e-01 100.0% 85.7%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.81 76.0 6.96e-01 100.0% 86.3%
2nwaA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.75 40.0 4.60e-01 100.0% 70.7%
6aieA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 31.0 2.52e-01 99.0% 22.0%
2l8kA00 3.30.1330.220 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Arterivirus nonstructural protein 7 alpha 0.70 32.0 2.94e-01 100.0% 34.1%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.69 38.0 4.05e-01 99.0% 60.9%
1ejfA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 46.0 4.45e-01 100.0% 63.6%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.67 34.0 3.76e-01 97.0% 59.5%
2z7rA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 32.0 3.51e-01 100.0% 54.8%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 46.0 4.94e-01 100.0% 82.8%
4eqmA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 38.0 3.97e-01 98.0% 62.9%
1zysA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 37.0 3.84e-01 100.0% 58.9%
2vz6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 37.0 3.99e-01 98.0% 66.3%
2kmwA01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 44.0 4.42e-01 99.0% 68.3%
4redB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 36.0 3.92e-01 97.0% 65.5%
4af3A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 37.0 3.94e-01 100.0% 64.8%
2kcaA00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.63 34.0 3.30e-01 99.0% 45.9%
3gniB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 36.0 3.80e-01 100.0% 64.0%
5hesA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 31.0 3.46e-01 100.0% 58.0%
2y4iB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 36.0 3.81e-01 100.0% 62.6%
2cxiA01 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.62 34.0 3.77e-01 99.0% 67.1%
2acxA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 36.0 3.82e-01 100.0% 63.7%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 47.0 4.65e-01 100.0% 79.4%
3uc4A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 34.0 3.63e-01 98.0% 62.4%
3zduA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 31.0 3.52e-01 100.0% 64.5%
3dlsB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 35.0 3.55e-01 100.0% 58.2%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.60 38.0 3.66e-01 100.0% 56.8%
2weiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 35.0 3.70e-01 100.0% 63.3%
4js8A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 35.0 3.74e-01 100.0% 66.3%
4c0tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 35.0 3.70e-01 100.0% 64.1%
3fxzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 33.0 3.39e-01 98.0% 55.1%
4zj9A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 45.0 4.71e-01 98.0% 88.2%
5ds1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 44.0 4.57e-01 97.0% 90.2%
4feuF01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 30.0 3.39e-01 97.0% 68.5%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.55 30.0 2.90e-01 81.8% 45.5%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 28.0 3.34e-01 84.8% 71.6%
2zu2A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 33.0 3.40e-01 97.0% 62.2%
6ewnA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 4.30e-01 100.0% 87.9%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.52 36.0 3.39e-01 100.0% 58.2%
2ynaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 34.0 3.65e-01 98.0% 76.1%
7a0kA01 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.50 35.0 2.62e-01 84.8% 26.7%
1v9kA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.50 36.0 2.85e-01 76.8% 88.1%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932693 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.88 83.0 7.69e-01 100.0% 98.3%
5070341 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.88 82.0 7.52e-01 100.0% 97.6%
3556801 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.87 82.0 7.46e-01 100.0% 95.2%
4513514 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.87 80.0 7.34e-01 98.0% 100.0%
5000301 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.87 81.0 7.66e-01 100.0% 100.0%
4956728 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.86 81.0 7.29e-01 100.0% 95.4%
4638008 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.86 82.0 7.58e-01 100.0% 95.8%
4026621 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.86 81.0 7.69e-01 100.0% 95.7%
4682340 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.86 80.0 7.35e-01 100.0% 96.0%
4323756 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.85 80.0 7.12e-01 100.0% 99.3%
4976162 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.85 79.0 7.40e-01 100.0% 99.2%
4970832 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.85 79.0 7.27e-01 100.0% 95.2%
4629505 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.85 80.0 6.98e-01 100.0% 100.0%
3056924 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.84 78.0 5.70e-01 100.0% 98.8%
4069281 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.84 79.0 6.56e-01 100.0% 96.9%
4876258 1.1.2.1 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 0.83 78.0 6.88e-01 100.0% 93.5%
4175999 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.83 78.0 7.51e-01 99.0% 100.0%
4255464 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.83 78.0 5.68e-01 100.0% 98.4%
3728982 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.83 78.0 7.05e-01 100.0% 93.8%
4297838 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.83 79.0 7.71e-01 100.0% 99.0%
4030042 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.83 78.0 6.96e-01 100.0% 94.7%
3302882 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.83 77.0 7.08e-01 100.0% 94.4%
3786933 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.83 77.0 7.09e-01 100.0% 96.8%
4654615 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.83 77.0 5.74e-01 100.0% 98.3%
4120984 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.82 77.0 7.25e-01 100.0% 95.7%
4886404 4042.1.1.1 ↗ a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6 0.82 76.0 5.71e-01 99.0% 100.0%
4366177 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.82 76.0 5.68e-01 100.0% 98.3%
3792089 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.82 76.0 6.79e-01 100.0% 94.8%
4599969 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.81 74.0 7.26e-01 97.0% 100.0%
2700176 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.81 76.0 7.27e-01 100.0% 95.6%
4921634 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.81 75.0 7.13e-01 98.0% 94.6%
3695559 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.81 75.0 6.81e-01 100.0% 94.6%
4587173 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.80 75.0 7.35e-01 99.0% 100.0%
3517994 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.80 75.0 7.41e-01 100.0% 98.1%
3801974 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.80 75.0 7.23e-01 100.0% 92.7%
3616946 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.79 75.0 7.35e-01 100.0% 97.1%
4024673 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.79 73.0 7.05e-01 99.0% 100.0%
4191050 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.79 74.0 6.97e-01 99.0% 98.3%
2714993 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.79 67.0 5.77e-01 89.9% 72.1%
3881936 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.78 71.0 7.10e-01 97.0% 100.0%
4067177 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.77 72.0 6.91e-01 99.0% 99.1%
1499824 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.75 68.0 6.03e-01 100.0% 92.1%
4934590 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.74 47.0 4.79e-01 99.0% 66.3%
3674829 1.1.13.61 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gar1 0.72 35.0 4.11e-01 97.0% 65.7%
4947901 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.70 48.0 4.96e-01 100.0% 75.3%
3795449 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.70 48.0 4.60e-01 100.0% 61.7%
5005273 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.69 48.0 5.02e-01 100.0% 79.5%
4951974 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.69 47.0 4.87e-01 100.0% 73.7%
4982583 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.69 47.0 4.02e-01 100.0% 43.8%
4980371 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.69 47.0 5.00e-01 100.0% 79.5%
5031161 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.69 47.0 4.02e-01 100.0% 43.8%
4987233 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.69 46.0 4.89e-01 98.0% 78.8%
5074343 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.69 46.0 5.18e-01 98.0% 90.7%
5035122 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.69 47.0 4.05e-01 100.0% 45.2%
5001498 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.69 46.0 4.38e-01 99.0% 57.5%
4988969 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.69 45.0 5.00e-01 97.0% 84.6%
4962615 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.69 47.0 4.82e-01 100.0% 73.7%
5056216 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.68 47.0 4.46e-01 100.0% 59.2%
5040124 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.68 47.0 4.83e-01 100.0% 74.7%
4928475 319.1.1.5 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.68 45.0 4.36e-01 98.0% 59.6%
4930399 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.68 46.0 3.88e-01 99.0% 41.8%
4947251 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.68 47.0 4.49e-01 100.0% 61.7%
5056769 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.68 47.0 4.93e-01 100.0% 79.8%
4960987 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.68 46.0 4.03e-01 100.0% 46.7%
4974098 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.67 46.0 4.84e-01 100.0% 77.8%
4939095 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.67 44.0 4.94e-01 96.0% 88.0%
3963092 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 35.0 3.62e-01 100.0% 52.6%
5051740 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.67 47.0 4.81e-01 100.0% 76.6%
5004113 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.67 44.0 4.97e-01 97.0% 89.3%
5011151 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.66 47.0 3.96e-01 100.0% 45.0%
3629390 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.66 46.0 4.50e-01 100.0% 66.1%
3473978 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.65 46.0 4.44e-01 100.0% 65.5%
5052436 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.64 44.0 4.84e-01 99.0% 88.7%
4293664 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.61 48.0 4.30e-01 100.0% 60.7%
4008223 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.61 46.0 4.48e-01 97.0% 71.8%
4602902 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.60 49.0 4.48e-01 100.0% 66.2%
2770325 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.60 48.0 4.69e-01 100.0% 79.2%
3948364 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 48.0 4.32e-01 100.0% 63.7%
4957565 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 43.0 3.95e-01 97.0% 60.0%
3256781 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.55 48.0 4.67e-01 100.0% 85.8%
D7 medium residues 1080-1155
PDB
Domain cluster: rep: IMGVR_UViG_3300025836_000142-3300025836-Ga0209748_10097103__D124-188