DNA-directed_RNA_polymerase_II

Euk-Vir

Heliothis_virescens_ascovirus_3g

DNA-directed_RNA_polymerase_II__YP_009702063__Heliothis_virescens_ascovirus_3g__1246651

Identity

76.5 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Ascoviridae› Ascovirus› Heliothis_virescens_ascovirus_3g

TaxID: 1246651

View cluster (58 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-38_397-426

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3rq9A00	1.10.287.2500	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.80	45.0	4.17e-01	83.6%	44.9%
2kw6A00	6.10.140.1300	Special › Helix non-globular › Helix Hairpins ›	0.73	41.0	4.07e-01	80.3%	52.3%
4e4eA01	1.10.287.990	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain	0.69	43.0	4.14e-01	86.9%	54.9%
3anwA01	1.20.58.1030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.68	46.0	3.78e-01	93.4%	38.1%
3h3mA00	1.20.58.380	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit.	0.66	47.0	4.12e-01	73.8%	95.5%
2mpnA00	6.10.140.1340	Special › Helix non-globular › Helix Hairpins ›	0.60	37.0	3.61e-01	72.1%	55.9%
2v6yA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.60	41.0	3.82e-01	70.5%	98.7%
3kztA00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.53	42.0	3.18e-01	83.6%	59.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4932313	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.76	40.0	3.94e-01	77.0%	47.7%
4680241	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.73	42.0	4.18e-01	82.0%	55.4%
3568826	5020.1.1.13 ↗	extended segments › Subunit VIII of photosystem I reaction centre, PsaI › Subunit VIII of photosystem I reaction centre, PsaI › Subunit VIII of photosystem I reaction centre, PsaI › TMEM219	0.71	39.0	3.84e-01	70.5%	50.8%

D2 medium residues 39-149

PDB

Domain cluster: rep: DNA-directed_RNA_polymerase_II__YP_009701529__Heliothis_virescens_ascovirus_3f__328614__D20-135

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04563.21 best	RNA_pol_Rpb2_1	59.4	5.00e-16	99.1%	53.7%

D3 medium residues 150-205_218-263_340-396

PDB

Domain cluster: rep: DNA-directed_RNA_polymerase_II__YP_009701529__Heliothis_virescens_ascovirus_3f__328614__D180-205_217-381

D4 medium residues 264-296_308-339

PDB

D5 medium residues 527-638

PDB

Domain cluster: rep: DNA-directed_RNA_polymerase_subunit_beta__YP_003406778__Marseillevirus_marseillevirus__694581__D519-604

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04566.19 best	RNA_pol_Rpb2_4	52.5	5.70e-14	55.4%	95.2%

D6 medium residues 901-1033

PDB

Domain cluster: rep: KU935715.1__AND75470.1__ME3_309__00309__D264-326_420-534

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00562.34 best	RNA_pol_Rpb2_6	154.5	6.30e-45	100.0%	34.6%